We've heard the arguments about the relative importance of mutations in cis regulatory regions vs. coding sequences in evolution before — it's the idea that major transitions in evolution were accomplished more by changes in the timing and pattern of gene expression than by significant changes in the genes themselves. We developmental biologists tend to side with the cis-sies, because timing and pattern are what we're most interested in. But I have to admit that there are plenty of accounts of functional adaptation in populations that are well-founded in molecular evidence, and the cis regulatory element story is weaker in the practical sense that counts most in science (In large part, I think that's an artifact of the tools — we have better techniques for examining expressed sequences, while regulatory elements are hidden away in unexpressed regions of the genome. Give it time, the cis proponents will catch up!)
This morning, I was sent a nice paper that describes a pattern of functional change in an important molecule — there is absolutely no development in it. It's a classic example of an evolutionary arms race, though, so it's good that I mention this important and dominant side of the discipline of evolutionary biology — I know I leave the impression that all the cool stuff is in evo-devo, but there's even more exciting biology outside the scope of my tunnel vision. Also, this paper describes a situation and animals with which I am very familiar, and wondered about years ago.

When I was a graduate student in Oregon, I worked now and then with an emeritus faculty member named Jim Kezer — a great guy who was classically trained in natural history, and who would dazzle us benchies by taking us on field trips into the Oregon Cascades, where he could name every weed and insect we'd encounter, and he'd tell us all kinds of stories about these otherwise almost unnoticeable organisms. We made collecting trips up into a remote lake where we'd harvest rough-skinned newts, Taricha granulosa, for histology studies. This lake was swarming with newts — it was pretty much the only large animal you'd find there, and that was because they had a potent biochemical defense mechanism: they oozed a neurotoxin. These newts were not popular denizens of the lakes, because where they were found, the fish and frogs soon disappeared.
The toxin they secreted is called tetrodotoxin, or TTX. It's the same nasty substance that the pufferfish, fugu, contains — it binds the sodium channels of the nerves, blocking all electrical transmission. It's notoriously popular in sushi because at low doses it can cause a tingling sensation, similar to what you felt when the novocaine was wearing off after your visit to the dentist, and it also provides the titillating thrill of danger. Overdoses cause a flaccid paralysis, and can be lethal. More than a mild tingle, I suspect it's that entirely psychological frisson that this food might just kill you that lends fugu its culinary notoriety.
The newt has no other defenses. They don't have fangs or claws, they are as soft as noodles, and so these lakes are reduced to big bowls of squirmy delicate amphibian meat that is frustratingly untouchable by most predators because of the unfortunate fact that they are also using a nasty biotoxin in violation of all of the rules of the Geneva Convention. You might expect that if something…evolved…a countermeasure, this would be a situation ripe for exploitation.
And so it is. Some of the most successful predators of small amphibians are another herpetological marvel, the garter snakes, Thamnophis. Unfortunately, if you feed ordinary garter snakes a diet of rough-skinned newts, they tend to move more and more slowly as the innervation of their skeletal muscles undergoes a toxin blockade, and if they eat enough, they die. This is not a good thing from the snake's perspective, although the newts do get revenge and their relatives benefit from the subsequent reluctance of snakes to eat them. It also presents an evolutionary opportunity, in that resistance to TTX in snakes can be a real advantage, since they won't die and they'll be able to feast on squishy purplish-brown and orange tubes of meat.
This is happening right now. Populations of garter snakes, T. sirtalis, in California, Oregon, and Idaho are showing different degrees of resistance to TTX, and these differences are being traced right down to specific changes in the amino acid sequence of the snake sodium channel. It's happening repeatedly, too, with different populations independently acquiring different variations that confer differing degrees of resistance.
We know a lot about the structure and biophysics of the sodium channel — it's one of those universal proteins we find all over the animal kingdom. It's a protein that loops through the membrane multiple times, forming four cylindrical domains. These cylinders pack together, leaving a space at the center that is the pore proper; there are also regions of the protein that act as gates, opening to allow sodium to flow through and generate an electrical current, or closing to block it.

We also know how TTX works. It binds especially strongly to an aromatic amino acid on the outside of the cell, in domain I. In that place, it effectively blocks the pore, making the channel permanently closed so no current flows.
Obviously, the animal that must most effectively resist the effects of TTX is the one that is producing the toxin. Species that make TTX, like fugu, typically replace that aromatic amino acid with one that doesn't bind TTX. It's a testimony to the hit-or-miss nature of mutations and evolutionary change that the snakes haven't stumbled onto that same change—they've instead made other small changes to the protein to reduce binding of TTX. Instead, they've tweaked the pore helix and β-strand from domain IV, which also reduces the effectiveness of TTX binding.
Here's a summary tree diagram of the differences found in these populations. We're looking at 5 different populations of snakes, named after their collection sites; Benton and Warrenton are in Oregon, Willow Creek is in California, and Bear Lake is in Idaho. Illinois represents the ancestral phenotypic state, a population from a state without TTX-secreting newts, and which has no TTX resistance.
TTX resistance is measured in MAMUs, or mass-adjusted mouse units — low numbers mean they have no particular resistance, while large numbers indicate increasing resistance. The Bear Lake and Illinois populations are sensitive, while the others have varying degrees of resistance.
The right side of the figure is the interesting bit: it shows the amino acid sequence of a small stretch of the protein in domain IV, and you can see the differences. All the resistant populations have a valine at position 1561, but notice that it is likely that these represent two independent origins. That valine alone only weakly improves resistance; the Benton population has an additional amino acid substitution that doubles the resistance. Willow Creek snakes have substantially greater resistance, and they also have 3 other different substitutions.

Amino-acid sequence differences for four snake populations. a, Phylogeographic relationships based on mitochondrial DNA analysis of 19 North American populations of Thamnophis sirtalis indicate separate origins of elevated resistance to TTX in the Willow Creek population compared with populations from Benton and Warrenton. Bear Lake is from a third lineage and is not resistant to TTX. Whole-animal TTX resistance for each population is reported in mass-adjusted mouse units (MAMU); branch colours reflect statistically distinguishable levels of resistance. Whole-animal TTX resistance was measured as a mass-adjusted dose of TTX (MAMU) that produced an average of 50% decrease in snake sprint speed in each population. b, Amino-acid alignment of part of the domain IV S5–S6 linker that affects TTX binding from tsNaV1.4. Green, pore α-helix; purple, β-strand; asterisk, selectivity filter. Dots indicate identical amino acids and grey shading highlights sequence differences between populations. Despite independent evolutionary histories, all resistant snakes share the substitution of valine for isoleucine at position 1,561.
There are other details — the proteins have been isolated, chimeric proteins generated to isolate specific regions, and they've been expressed in Xenopus oocytes, all demonstrating that these small changes are actually responsible for conferring TTX resistance. The meat of the story, though, is that we have concrete measurements of specific molecular changes that are responses to an evolutionary arms race, and we're seeing these differences emerge in different populations of a single species. This is evolution in action, and the observed appearance of new properties, traced right down to single changes in proteins.
Geffeney SL, Fujimoto E, Brodie ED III, Brodie ED Jr., Ruben PC (2005) Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interaction, Nature 434:759–763.
Soong TW, Venkatesh B (2006) Adaptive evolution of tetrodotoxin resistance in animals. Trends Genet. 2006 Nov;22(11):621-6.
35 Comments
steve s · 30 June 2008
iml8 · 30 June 2008
Ah, so Myers was a Duck (I wuz a Beaver) ... and did time in the
People's Republic of Eugene. Both of us have no doubt lost our
webbed feet ... in his current environment I imagine he is evolving
resistance to mosquitoes. "Do you want to take him to Michigan, or
eat him here?" "Nah, if we take him to Michigan the big guys'll take
him away from us."
Cool stuff on snakes. I trying to avoid running down the garter
snakes hiding in my lawn when I'm mowing -- I haven't done one in
for a few years, I keep wondering if there's a selection effect in
the matter and I'm evolving snakes that know how to avoid lawn mowers.
White Rabbit (Greg Goebel) http
midwifetoad · 30 June 2008
The different resistance strategies are obvious evidence of front-loading, right?
Albatrossity · 30 June 2008
PZ
I'm shocked that you didn't mention that TTX is also found in a cephalopod, the Blue-ringed Octopus!
More intriguingly, there is good evidence that TTX is not synthesized by all of the critters who have managed to make it work for them; it is probably a bacterial product. See
http://www.chm.bris.ac.uk/motm/ttx/ttx.htm
veritas36 · 30 June 2008
Somebody post on this:
http://www.badscience.net/2008/06/all-time-classic-creationist-pwnage/
shafly takes on R. Lenski -- too funny
iml8 · 30 June 2008
iml8 · 30 June 2008
The referenced articles, incidentally, said that TTX was as deadly
as saxitoxins, which is a little scary. I wrote an online document
about chemical and biological warfare and found the spooks got into
saxitoxins obtained from marine cone snails (which I think get them
in turn by eating dinoflagellates).
When Francis Gary Powers was shot down over the USSR in his U-2
spyplane on 4 July 1960, his Soviet interrogators took a silver dollar
off of him. It had a needle inserted into it that was coated
with saxitoxins and he told them: "Be careful how you handle that."
They pricked a dog with it and the beast simply fell over and
died immediately.
White Rabbit (Greg Goebel) http://www.vectorsite.net/tadarwin.html
Ichthyic · 30 June 2008
(which I think get them in turn by eating dinoflagellates).
If so, it would be via bio-accumulation.
Cones are all predatory, and all eat annelid worms or larger things.
the really toxic ones are all piscivores, IIRC.
iml8 · 30 June 2008
harold · 30 June 2008
harold · 30 June 2008
A link I forgot to include
http://en.wikipedia.org/wiki/Action_potential
Ichthyic · 30 June 2008
I vaguely recall some cones can actually shoot poison darts. Myth?
no myth, fact.
Cones have a modified radula (tongue, essentially) that forms a bag of harpoon-like "teeth" which are hollow and attached to a venom sack.
once they find a prey item, they launch a "tooth" through their proboscis into the target, and venom is pumped in.
a recent paper on the subject:
http://www.biolbull.org/cgi/content/full/207/2/77
using conotoxins:
http://news.bbc.co.uk/1/hi/sci/tech/4846504.stm
video clips showing piscivorous cone capturing goby:
http://www.oceanfootage.com/stockfootage/Cone_Shell
Henry J · 30 June 2008
raven · 30 June 2008
Mike Elzinga · 30 June 2008
Ernst Hot · 1 July 2008
I demand to see the data. And i want samples of the snakes!
Nigel D · 1 July 2008
Science Nut · 1 July 2008
Has anyone studied the evolving habits of the snakes at the Discotute? They are often found injecting their venom into the minds of young sentient bipedal creatures.
(Sorry...didn't mean to denigrate the true lurking reptiles that rightfully hiss, slither and lurk.)
Allen MacNeill · 1 July 2008
harold · 1 July 2008
iml8 · 1 July 2008
Nigel D · 1 July 2008
Harold, I agree.
Allen, I think you are leaping to conclusions that are not justified.
While changes in genes that regulate devlopment tend to produce more obvious morphological changes, there is no reason to suppose that this change in several snake populations cannot be the start of a speciation event by a cladogenetic process.
If, as Harold points out, the snake populations are isolated, the populations that can eat the toxic newts could very well diverge from their relatives and form a new species. However, evolutionary theory predicts that such gradual change is likely to take many generations (perhaps several thousand or tens of thousands) unless it is forced by a strong selection pressure.
Besides, at what point would we recognise that the various populations of snakes actually are distinct species? It makes no difference to the snakes whether they are a variety, a subspecies, a species or even a distinct genus.
iml8 · 1 July 2008
OK, got my details straight(er) ... cones synthesize their own class of
toxins, reffered to as (duh) "conotoxins":
www.itg.be/itg/DistanceLearning/LectureNotesVandenEndenE/Teksten/sylabus/46_Marine_biotoxins.doc
There are apparently about 100 different variations on conotoxins,
falling into roughly six categories of effect, one category being
potassium channel inhibitors.
White Rabbit (Greg Goebel) http://www.vectorsite.net
iml8 · 1 July 2008
... and (duh again) sodium-channel inhibitors.
Stanton · 1 July 2008
Stanton · 1 July 2008
iml8 · 1 July 2008
Ichthyic · 1 July 2008
I'm sorry, Henry, but I'm going to have to shoot you now.
"What a senseless waste of human life."
Ichthyic · 1 July 2008
Allen, I think you are leaping to conclusions that are not justified.
that IS Allen's forte.
iml8 · 1 July 2008
D P Robin · 5 July 2008
Nigel D · 9 July 2008
DPR, Wikipaedia has this paper listed as a source under Toxicofera:
http://www.venomdoc.com/downloads/2003_BGF_Elapid_3FTx_phylog.pdf
3FTxs are peptide toxins. TTX is a small molecule (even though part of its structure seems to scream out "arginine" as a biosynthetic precursor).
D P Robin · 9 July 2008
Snake Estate · 16 November 2008
Stanton · 16 November 2008
Whatever happened to Nigel D?