It would help if he read the actual book...

Posted 19 February 2009 by

I've never heard of the Journal "Politics and the Life Sciences", but it is quite eclectic. Recent articles include ,Thomas R. Malthus, An Essay on the Principle of Population, Barriers to SCHIP enrollment, Marion Nestle, Food Politics: How the Food Industry Influences Nutrition and Health, Eisenhower's 1955 heart attack and Organ trading in Jordan. In September 2008, they they significantly broadened their eclecticism by publishing book reviews by Intelligent Design proponents. Of interest to me, they published a review by philosopher and dedicated anti-materialist Angus J. L. Menuge of "Why Intelligent Design Fails". I'm interested of course, because I have a chapter in this book. Now, why they would publish a review of a book published four years ago is not clear, but at least they could have got a reviewer who actually read the book. Lets see how Dr. Menuge fares with my chapter as an example
Musgrave argues that the flagellum probably developed from a type III secretory system (TTSS), since they share a similar structure and function and contain homologous proteins. However, Scott Minnich, an expert on the flagellum, doubts this account, pointing out that 30 of the 40 or so proteins in the flagellum are not found in the TTSS, and that even if all the parts were available, their correct assembly depends on a complex control program that is arguably itself IC.
Well, not a good start.
  1. I don't argue that the flagellum derives from a type 3 secretory system, I argue that the eubacterial flagellum and the TTSS share a common ancestor, a more primitive secretory system.
  2. Minnich's "example" is just plain wrong, if the good Dr. had actually read my chapter, especially pages 77-79 and 81 he would have realised that.
Now point 1 may seem a little nit picky, but if the guy can't even get that fairly clear point right, then there's not much hope that the rest will be better. Which is amply demonstrated with the Minnich quote. If he had read those pages in my chapter, where I show that the whole "40 proteins" thing is a furphy, and that as of 2004, 80-88% of all the core flagella proteins have a homologue in either the TTSS or other associated systems (eg. the motor proteins of the flagella are homologous to other motor proteins that drive secretory systems) he wouldn't have made that remark (or at the very least checked the research I quoted to make sure). And that was back in 2004, since then evidence has steadily been accumulating of even more relatedness between the eubacterial flagellum and the TTSS. Nick Matzke and Mark Pallen published a pretty good paper in 2006 outlining the homologies found (nicks post on Pandas, showing the homology table is here), and Nick's magisterial review of bacterial flagellar evolution is here. Now, the review was published in 2008, from the evidence I cited in my chapter, it was clear Minnich's assertions were wrong. And there has been a huge amount of work since then in the open literature (and on the web), especially by NicK Matzke and Mark Pallen, which comprehensively demolishes Minnich's statement. Yet Menuge, in 2008, drags Minnich's quote out without comment. Not exactly work of a high scholarly calibre. And what about the archebacterial flagellum? Is that chopped liver? Here we have an example of a flagellar system with clear intermediates from secretory system, to gliding motility stsyem to swimming system. It's as clear a refutation of Behe as you could want, but the ID proponets always ignore it. Completely.
The archebacterial flagellum, this is clearly homologous to the type IV secretory system, which is also a gliding motility system, which in turn is clearly homologous to the type II secretory system.
While Musgrave does provide a broad three-step narrative for the appearance of the flagellum, he admits it is only a "possible scenario"(p. 82)
Yes, that's because there is more than one possible way to build a flagellum. I suggested that there was a gliding motility stage in the evolution of the eubacterial flagellum, just like there was in the archebacterial flagellum and the syneccocus swimming system (how come IDers never mention the non-flagella swimming systems either, or comment on them?). But the flagellum could have gone straight from secretion to swimming as the motility of truncated flagella shows us is possible. Still, the whole point of Behe's claims is that there is no possible function, in principle, of isolated parts of the flagellum. The fact that you can indeed find, even in principle, functional intermediates, blows away his argument. Add to that we actually have examples of functioning intermediates, they very things Behe says can't exist, and Behe's argument is demolished. But Menuge doesn't mention this (or the examples I document). The rest of the review is like this, ignoring substantial arguments and missing the point. You get the very clear impression Menuge just flipped through the book, saw a key word and wrote down some ID boilerplate without actually going through the process of actually reading the book or thinking deeply about it (Flagella, okay write down Minnich's stuff). Still, if ID folks are reduced to writing reviews of four year old books that can only be published in obscure journals, you know the ID program is going badly. I wonder if they will cite this review as evidence that they publish in peer-reviewed journals?

222 Comments

Stanton · 18 February 2009

The fact that Intelligent Design proponents have gone for over 2 decades without a half an iota of research suggests that the program is faring very badly.

Everything else, from slander, political redefinition of "science" and "education" to publishing obvious quotemines in crackpot journals no one outside of Podunk Science, New Jersey, is simply sauce and marinade.

John Kwok · 18 February 2009

A fair assessment Stanton, but you forget the childish - indeed, and virtually felonious - conduct from the "josef Goebbels of the ID movement", my dear "buddy" Bill Dembski, whose "record" includes falsely accusing eminent ecologist Eric Pianka of being a "bioterrorist" to the Federal Department of Homeland Security and "borrowing" the Harvard University cell animation video produced by XVIVO (I know of at least one prominent biologist who would prefer seeing him shot for his conduct. As for myself, I wish we could feed him and the rest of the Dishonesty Institute to a hungry cloned T. rex.):
Stanton said: The fact that Intelligent Design proponents have gone for over 2 decades without a half an iota of research suggests that the program is faring very badly. Everything else, from slander, political redefinition of "science" and "education" to publishing obvious quotemines in crackpot journals no one outside of Podunk Science, New Jersey, is simply sauce and marinade.

Frank J · 18 February 2009

You get the very clear impression Menuge just flipped through the book, saw a key word and wrote down some ID boilerplate without actually going through the process of actually reading the book or thinking deeply about it (Flagella, okay write down Minnich’s stuff).

— Ian Musgrave
Or he could have read it carefully, several times over the years, each time getting more ideas as to how best to represent it to his target audience. Now if he reads you review, reads the book again more carefully then retracts his review, I guess one could rule out my alternative possibility.

Doc Bill · 18 February 2009

Ah, good old Angus. Made a fool of himself in Kansas during the Kangaroo Kourt.

Here's his website.

Says it all.

mrg (iml8) · 18 February 2009

I looked at this guy's publication list and from the titles I would question that he is capable of doing any more than triggering off specific buzzwords and fetching the Same Old Tired Argument from the ID archive in response. People who are interested in technicalities don't write articles with titles like that.

Cheers -- MrG / http://www.vectorsite.net/gblog.html

Frank J · 18 February 2009

Says it all.

— Doc Bill
I thought that name sounded familiar. See especially the cross examination from his testimony at the Kangaroo Kourt about the age of the earth and common descent. I think we can forget about any retraction of the review.

Mike Elzinga · 18 February 2009

Wow! Sorry about the off-topic post. I didn't know where else to post it.

I just heard about this cache of ice age fossils find on National Public Radio.

It’s an entire ecosystem found under a parking garage on Wilshire Blvd in LA.

Frank J · 18 February 2009

Doc Bill:

That's not Menuge's website, but one that's critical of him and other anti-evolution activists. I thought it was odd that he would link to his embarrasing cross examination, but it was the title "Intellgent Design Apologist" that clinched it.

Mike Elzinga · 18 February 2009

Mike Elzinga said: Wow! Sorry about the off-topic post. I didn't know where else to post it. I just heard about this cache of ice age fossils find on National Public Radio. It’s an entire ecosystem found under a parking garage on Wilshire Blvd in LA.
Here is the article in the LA Times.

stevaroni · 18 February 2009

It’s an entire ecosystem found under a parking garage on Wilshire Blvd in LA.

I've worked on-and-off in LA for years, and the tarpits museum is one of the most interesting spots in the whole city. For those who have never been, imagine a block-wide park, in the middle of a very built up - and expensive - neighborhood, and wherever you dig, you pull up giant blocks of Pleistocene bones glued together in a mass of solidified tar. Apparently, a large part of the surrounding area is pretty much the same, you can't dig down without hitting tarry deposits. The only reason the pits area itself survived the building boom of the 20's was that it was particularly unappetizing land to build on, and survived long enough to became a tourist attraction. In the museum there's a little section dedicated to the area's history. Originally, it was basically unwanted land, and the original owner was a surveyor who received the area around Hancock Park as partial payment for settling a dispute over the boundaries of some of the original ranch grants. Now it's some of the most expensive land in LA. Go figure.

Doc Bill · 18 February 2009

Frank!

Ah, curse you Google!

They need a "This is what you're REALLY looking for" button.

Mike Elzinga · 18 February 2009

Good grief! The whole review is a pretentious piece of crap. If there is any one sentence in this review that captures the essence of the argumentative tactics of the ID/Creationists, it would probably be this.

The authors also confuse information that is new to an agent (epistemic) with information new to the world (ontological).

— Menuge in his review of Young and Edis
I guess the only criterion for an argument by an ID/Creationist is that it makes ignorant rubes quiver and pee their pants with delight. Airily dismiss the entire edifice of science with a line of complete gibberish that suggests “this is what the world is all about”, and one can pass one’s self off as profound. In the right crowd, it works every time.

mrg (iml8) · 18 February 2009

Mike Elzinga said: In the right crowd, it works every time.
He could not have reallyread the article because he had no idea of what the terms being used in it actually meant. Cheers -- MrG / httpe://www.vectorsite.net/gblog.html

Mike Elzinga · 18 February 2009

mrg (iml8) said:
Mike Elzinga said: In the right crowd, it works every time.
He could not have reallyread the article because he had no idea of what the terms being used in it actually meant. Cheers -- MrG / httpe://www.vectorsite.net/gblog.html
Yeah, I think this is the standard shtick. FL does it also. It goes right back to Gish and his gallop. He didn’t listen, he didn’t hear, and nothing ever registered. He just kept on galloping and inventing words and games as he went. Now it’s all on line and documented for everyone else to see; and these pretenders aren’t even embarrassed. I would love to see a very large wall poster of this kind of crap that biology teachers could hang on the walls of their classrooms; two columns, what these ID/Creationists jabber, and right next to it, the truth. It could easily fill an entire wall.

mrg (iml8) · 18 February 2009

Mike Elzinga said: Now it’s all on line and documented for everyone else to see; and these pretenders aren’t even embarrassed.
He has no idea he doesn't understand. I'm not a scientist, certainly not a biologist or biochemist, and when I get a formal research paper thrown in my face I don't necessarily follow it all. The difference is that I know I don't follow it. When the mindset is to collect an inventory of phrases and use them as an index to a cardfile of canned arguments, the issue of visualizing in one's head how the machinery works is not just irrelevant -- it doesn't even exist. There's no more cognizance there than there is in an ELIZA-type program. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Rahn · 18 February 2009

stevaroni said: For those who have never been, imagine a block-wide park, in the middle of a very built up - and expensive - neighborhood, and wherever you dig, you pull up giant blocks of Pleistocene bones glued together in a mass of solidified tar.
And I remember all too well working at the Royal Ontario Museum as a curatorial assistant......cleaning bones from the tar deposits off various specimens(notably a Giant Ground Sloth for the late Dr. Gord Edmunds) You should have heard the curses let out when when we put that same skeleton on display in the renovated Vertebrate Paleontolgy exhibit... AND COVERED THE BOTTOM HALF WITH TAR AGAIN!!!!

Mike Elzinga · 18 February 2009

mrg (iml8) said: When the mindset is to collect an inventory of phrases and use them as an index to a cardfile of canned arguments, the issue of visualizing in one's head how the machinery works is not just irrelevant -- it doesn't even exist. There's no more cognizance there than there is in an ELIZA-type program.
:-) Great description. These creatures are almost at the level of rats and pigeons in their responsiveness to operant conditioning.

mrg (iml8) · 18 February 2009

Mike Elzinga said: Great description.
Thanks. But I can clearly remember when I was a teenager and simply parroting phrases and notions I didn't honestly understand myself. When it comes time to actually put the lego blocks together and get something to work it doesn't turn out to be quite so easy. It's kinda funny, I run an aviation site with profiles of aircraft, but I've never been at the controls of an aircraft in my life -- strictly hobbyist stuff, like modeling. I talk to retired aircrew and groundcrew all the time on email and I'm plenty conversant with them, but every now and then I have to ask a question and sometimes I can see them reset: "You've never actually been there, have you?" "I never said I had." Can be fun talking with these guys: "I hear a 747 handles nice for a machine its size." "You can fly it with two fingers. It's like flying a Piper Super Cub." Cheers -- MrG / http://www.vectorsite.net/indexav.html

Stanton · 18 February 2009

John Kwok said: A fair assessment Stanton, but you forget the childish - indeed, and virtually felonious - conduct...
Nuts in the sauce. Nothing more.

Dave Wisker · 19 February 2009

Yet another case of IDers not understanding what they are criticizing. Dog bites man.

Stanton · 19 February 2009

Dave Wisker said: Yet another case of IDers not understanding what they are criticizing. Dog bites man.
If they understood what they intended to criticize, they wouldn't have a legitimate reason to criticize in the first place. So sad, really.

Les Lane · 19 February 2009

His review is pretty helpful if you need to know how your writing fits in with scholasticism. One wonders why he didn't choose a higher impact journal, e.g. Acta Proctologica Polonica.

Mike Elzinga · 19 February 2009

Les Lane said: His review is pretty helpful if you need to know how your writing fits in with scholasticism. One wonders why he didn't choose a higher impact journal, e.g. Acta Proctologica Polonica.
:-) It is also interesting how the ID/Creationist arguments combine scholasticism, post-modernism, implicit sectarian dogma, and new-age pseudo-science. When hermeneutics, exegesis, and etymology are the only methods used for understanding the universe, anyone can drift just about anywhere and arrive at just about any conclusion that "answers" the immediate challenge. If in this process one ends up with a whole pile of inconsistent garbage, one just plays the game on the garbage to “make it right”. Just babble incessently and put on confident airs as you go.

Frank J · 19 February 2009

Stanton said:
Dave Wisker said: Yet another case of IDers not understanding what they are criticizing. Dog bites man.
If they understood what they intended to criticize, they wouldn't have a legitimate reason to criticize in the first place. So sad, really.
But they'd have an illegitimate reason to criticize it. And they - known anti-evolution activists if not their truly clueless followers - all but admit that they do. Which makes me always suspicious that they understand much more than they let on. A better understanding would only help them misrepresent it better.

Mike Elzinga · 19 February 2009

Which makes me always suspicious that they understand much more than they let on. A better understanding would only help them misrepresent it better.

— Frank J
I have certainly had this suspicion at times. However, I think it is a very well-practiced shtick. Nearly every argumentative anti-evolutionist seems to be drawing on the same set of tactics. For example “Pastor” Bob Enyart was pulling this routine on a topic about entropy and evolution a little while ago. He tried to lure some of us into his “discussion”. I am more able to discern this trick with topics I know extremely well. There is no way Enyart could have such an extensive background in science that allows him to argue with anyone about nearly anything. He is faking it; as are all those ID/Creationists who aspire to impress the rubes in their churches. I think mrg(iml8) put it quite well; they have a very large file of canned responses that is triggered by key words that allows them to appear to be erudite to their followers. I think they all aspire to be good at this routine and practice it at every opportunity. This is especially true of those wanna-be leaders in their sects. FL is trying to do this. It looks ludicrous to anyone who knows the subject matter, but the poor rubes haven’t a chance of discerning who the fake is. So they go with the one who also quotes scripture.

Frank J · 19 February 2009

He is faking it; as are all those ID/Creationists who aspire to impress the rubes in their churches.

— Mike Elzinga
Indeed I think that they fake it both ways - they know more than most critics think, but far less than nonscientist fans who are dazzled by their "sciency" language. I don't think that Menuge understands flagella and secretory systems anywhere near as well as Musgrave does, but the question we must ask ourselves is "Would his review be any different if he did?" My guess is "no".

Les Lane · 19 February 2009

The evidence suggests that reading the book (would have) helped him very little. The review would have been most appropriate for a journal entitled Scholasticism and the Pseudosciences

JimmyJ · 19 February 2009

Mike Elzinga said: "It could easily fill an entire wall."
I guess it depends on how big of a strawman you wanna hang on the wall and how many - because that's all their arguments really boil down to, to be honest.

Mike Elzinga · 19 February 2009

Frank J said: - they know more than most critics think, ...
That’s no longer what I think, although people unfamiliar with their shtick might easily think so. Back in the 1970s when I first started watching this stuff, I thought their arguments were honest misunderstandings that could be cleared up with some simple explanations. It didn’t take long for me to realize these guys were faking it. After they received a rebuttal and an explanation of their “misunderstandings”, they would turn right around and reuse their crap in another venue as though it had never been explained to them. It became very obvious to me in my own areas of expertise that they were spreading misconceptions deliberately. And when I started reading the explanations of creationist “misconceptions” by experts in other fields, I realized that these creationists were playing the same game in every area of science. Now these clowns have a large, organized file of this crap that they can dip into at will. Thus many have taken up the shtick of sounding extremely knowledgeable and able to take on all comers. But it’s all an act, and it is now a stinking pile of debunked crap that identifies them as fakes when they use it.

Frank J · 20 February 2009

MIke,

I'm not sure what you mean by "that's no longer what I think," because the rest of your comment seems to agree with my suspicion that they are hiding some of their understanding.

I too thought years ago that it was honest, correctable misunderstandings, but now it seems that they are silently doing what Jonathan Wells was foolish enough to admit publicly, i.e. learning as much as they can about evolution so they can misrepresent it better. That would make their nonscientist followers think that they know it better than they do. But it would also makes critics say (if not necessarily think) that they misunderstand it more than they actually do, because all the critics have to go by are the deliberately confused statements that the activists publish, and not any other information that they are privately aware of, but would not dare speak or write down.

Mike Elzinga · 20 February 2009

Frank J said: MIke, I'm not sure what you mean by "that's no longer what I think," because the rest of your comment seems to agree with my suspicion that they are hiding some of their understanding. I too thought years ago that it was honest, correctable misunderstandings, but now it seems that they are silently doing what Jonathan Wells was foolish enough to admit publicly, i.e. learning as much as they can about evolution so they can misrepresent it better. That would make their nonscientist followers think that they know it better than they do. But it would also makes critics say (if not necessarily think) that they misunderstand it more than they actually do, because all the critics have to go by are the deliberately confused statements that the activists publish, and not any other information that they are privately aware of, but would not dare speak or write down.
Yeah, I wasn’t clear. Sorry. Earlier on, the misconceptions turned out to be deliberate taunts to draw scientists into debates. People like Gish for example very likely knew they were misrepresenting concepts, but they were using the taunts to get publicity and leverage respectability for themselves by showing their followers that they were “in the game” with legitimate scientists. Gish’s stuff was so silly it had to be deliberate. The same can be said for most of the clowns at the Discovery Institute. When it comes to the vast majority of argumentative ID/Creationists, it has how become a set of routines that they use to “debate” and taunt. Most don’t understand the concepts or the misconceptions. They simply know that if they “do this”, evolutionists will get mad and “do that” and then you “do this” and then evolutionists will “do that” etc. etc.. It is mostly copycat of what they saw their leaders do. But there is no comprehension of the underlying scientific concepts and misconceptions. I have no doubt that the leaders, some of whom went to university to get multiple shallow degrees, know very well what they are doing. Dembski knows, Behe knows, Wells knows, Sal knows. They have all had enough feedback as well as time to correct their misinformation, and yet they simply keep on with their shtick. But the followers and argumentative preachers like FL and Enyart and the others are just following a recipe. I think Ken Ham is another matter. I think he is simply a cruel scam artist exploiting fear and ignorance for money, and he has found a large market here in the U.S.. The preachers and church leaders who follow him have no clue. They too are following a recipe when they get argumentative. Part of the reason I think this is correct is the stuff I can see on the religion channels on TV and in the letters to the editor in our local news paper. These people have no clue what they are arguing, but they have learned to argue with seeming authority and confidence. If they are confronted, they immediately slip into the standard shtick, and then it becomes obvious to anyone who knows what is going on. The main reason they are able to do this is because of the huge pile of ID/Creationist crap they can now find on the internet. But they still use the hermeneutics, exegesis, etymology form of argument that they have practiced for so long with their sectarian dogma. Now they can seem “scientific” and respectable.

Mike Elzinga · 20 February 2009

I might add to my above comment that one of the effects of the ID/Creationist propaganda of misrepresentations and misconceptions has been to reveal quite clearly how some of the leaders of sectarian groups operate when they dominate their congregations. They will play fancy word games with anything to impress, and pseudo-science talk just gives them more leverage.

However, considering the implications of knowingly leading millions of people over a cliff with misinformation, it is hard to imagine that the “fellows” at the “Discovery” Institute were consciously believing they were doing society a favor by exposing this.

Charlie Wagner · 20 February 2009

"And that was back in 2004, since then evidence has steadily been accumulating of even more relatedness between the eubacterial flagellum and the TTSS. Nick Matzke and Mark Pallen published a pretty good paper in 2006 outlining the homologies found..."

"Relatedness" does not prove an evolutionary phylogeny

Related means "being connected either logically or causally or by shared characteristics."

An evolutionary phylogeny is much more. It is an ancestor-descendant relationship. Two forms could easily be "related" without being phylogenetically related as ancestors and descendants.

A subtle difference, I know. But exceedingly important.

Stephen Wells · 20 February 2009

...and apparently Charlie is out to prove that there are no cousins, only ancestors and descendants. Right....

Misha · 20 February 2009

Charlie Wagner said: Related means "being connected either logically or causally or by shared characteristics."
I believe that you are missing the point of one of your clauses, "shared characteristics." Characteristics are passed down by genetics. They are combinations of DNA sequences. So shared characteristics DOES imply phylogenic similarity. "Relatedness" may not prove evolutionary phylogeny but it is evidence toward a common ancestor.

Charlie Wagner · 20 February 2009

"I believe that you are missing the point of one of your clauses, “shared characteristics.” Characteristics are passed down by genetics. They are combinations of DNA sequences. So shared characteristics DOES imply phylogenic similarity. “Relatedness” may not prove evolutionary phylogeny but it is evidence toward a common ancestor."

All living things are "related".

"The wonderful lesson to come out of biology in the last five years is the same genes, the same parts, turn up again and again, from one species to another," she said. "The important lesson to realize is that we're all made of the same fabric, we're part of the same web, and there is some humility in the idea that is appropriate." - Victoria Foe

This "relatedness" may be evidence of a common origin but it
certainly says nothing about taxonomy or phylogeny, which are simply human artifacts.

phylogenies and taxonomies, like species, may merely be human conventions.

phantomreader42 · 20 February 2009

Stephen Wells said: ...and apparently Charlie is out to prove that there are no cousins, only ancestors and descendants. Right....
Apparently Charlie's parents disappeared into thin air the instant he was born. It might explain a lot.

Frank J · 20 February 2009

Welcome back Charlie. Not sure if you remember FL, but his account of natural history is as different from yours as mainstream science's is. Maybe you can debate your differences here.

Charlie Wagner · 20 February 2009

"Welcome back Charlie. Not sure if you remember FL, but his account of natural history is as different from yours as mainstream science’s is. Maybe you can debate your differences here."

Thanks. I've been annoying PZ lately ;-) I would be more active if my body would cooperate. I have prostate cancer that spread to my spine and rendered me paraplegic. My left arm and hand are mostly useless. But I slog on. Fortunately the mind seems to be OK...for what that's worth! (who is FL?)

John Kwok · 20 February 2009

If PZ still thinks Ken Miller is a "creationist", then, by all means, continue to annoy him. As for FL, he's one of our resident IDiots lurking here at PT:
Charlie Wagner said:

"Welcome back Charlie. Not sure if you remember FL, but his account of natural history is as different from yours as mainstream science’s is. Maybe you can debate your differences here."

Thanks. I've been annoying PZ lately ;-) I would be more active if my body would cooperate. I have prostate cancer that spread to my spine and rendered me paraplegic. My left arm and hand are mostly useless. But I slog on. Fortunately the mind seems to be OK...for what that's worth! (who is FL?)

Matt Young · 20 February 2009

If PZ still thinks Ken Miller is a "creationist", then, by all means, continue to annoy him.

Miller is not a creationist in the usual sense of the word, someone who thinks that the universe was created by a deity in a way consonant with some religious myth or scripture. But you can make a case that any theist (or deist) who thinks that the universe was created by a deity is a species of creationist. The claim, for example, that evolution is God's way of creating humans (or beetles or prokaryotes or whatever) is surely a close relative to intelligent-design creationism and almost has to assume that the laws of nature were front-loaded in some manner. Unless, of course, humans were the result of an experiment gone awry. Not that I would discourage anyone from annoying Myers, you understand.

Frank J · 20 February 2009

Thanks. I’ve been annoying PZ lately ;-) I would be more active if my body would cooperate. I have prostate cancer that spread to my spine and rendered me paraplegic. My left arm and hand are mostly useless. But I slog on. Fortunately the mind seems to be OK…for what that’s worth! (who is FL?)

— Charlie Wagner
I'm very sorry to hear about that. As with Dembski's son's autism, I try to make a point of saying that I only wish the best for those with whom I disagree on evolution and other political hot buttons. Unless they do things like fly planes into buildings. Then all bets are off. Anyway, FL is a PT regular, apparently a YEC, but one who prefers the "don't ask, don't tell" ID approach. He makes excuses for any OEC, including those who accept common descent, as long as they unite against "Darwinism." So he would not want to debate you on "what happened when" in biological history.

Charlie Wagner · 20 February 2009

I try to make a point of saying that I only wish the best for those with whom I disagree on evolution and other political hot buttons.

Thanks. I also make it a point never to take these disagreements personally. I also try to avoid ideology and stick to hard science. The evidence for ID, IMHO, resides in the data itself, not in the spin put on it by the author. My interpretation of this study is that this is prima facie evidence for ID:

Laib JA, Marin JA, Bloodgood RA, Guilford WH. The reciprocal coordination and mechanics of molecular motors in living cells. Molecular motors in living cells are involved in whole-cell locomotion, contractility, developmental shape changes, and organelle movement and positioning. Whether motors of different directionality are functionally coordinated in cells or operate in a semirandom "tug of war" is unclear. We show here that anterograde and retrograde microtubule-based motors in the flagella of Chlamydomonas are regulated such that only motors of a common directionality are engaged at any single time. A laser trap was used to position microspheres on the plasma membrane of immobilized paralyzed Chlamydomonas flagella. The anterograde and retrograde movements of the microsphere were measured with nanometer resolution as microtubule-based motors engaged the transmembrane protein FMG-1. An average of 10 motors acted to move the microsphere in either direction. Reversal of direction during a transport event was uncommon, and quiescent periods separated every transport event, suggesting the coordinated and exclusive action of only a single motor type. After a jump to 32 degrees C, temperature-sensitive mutants of kinesin-2 (fla10) showed exclusively retrograde transport events, driven by 7 motors on average. These data suggest that molecular motors in living cells can be reciprocally coordinated to engage simultaneously in large numbers and for exclusive transport in a single direction, even when a mixed population of motors is present. This offers a unique model for studying the mechanics, regulation, and directional coordination of molecular motors in a living intracellular environment.

John Kwok · 20 February 2009

Matt, I agree completely with your assessment of Ken (see below), but hope Myers might reconsider since Ken received this year's AAAS Public Understanding of Science and Technology Award last weekend at the AAAS meeting in Chicago (In the interest of full disclosure, I assisted Ken in his first debate against a creationist, held on the campus of our undergraduate alma mater, when he was a newly arrived assistant professor of biology, and I, an undergraduate, many eons ago.):
Matt Young said:

If PZ still thinks Ken Miller is a "creationist", then, by all means, continue to annoy him.

Miller is not a creationist in the usual sense of the word, someone who thinks that the universe was created by a deity in a way consonant with some religious myth or scripture. But you can make a case that any theist (or deist) who thinks that the universe was created by a deity is a species of creationist. The claim, for example, that evolution is God's way of creating humans (or beetles or prokaryotes or whatever) is surely a close relative to intelligent-design creationism and almost has to assume that the laws of nature were front-loaded in some manner. Unless, of course, humans were the result of an experiment gone awry. Not that I would discourage anyone from annoying Myers, you understand.

Frank J · 21 February 2009

I also try to avoid ideology and stick to hard science. The evidence for ID, IMHO, resides in the data itself, not in the spin put on it by the author. My interpretation of this study is that this is prima facie evidence for ID:

— Charlie Wagner
But surely you know that nothing in that abstract offers the slightest hope to the YEC and OEC followers of ID. And it should be quite clear from Dover and "Expelled" that the ID promoters are specifically targeting YECs and OECs in desperate hope that they infer their particular fairy tale out of all that "don't ask, don't tell what the designer did, when or how."

Charlie Wagner · 21 February 2009

"But surely you know that nothing in that abstract offers the slightest hope to the YEC and OEC followers of ID. And it should be quite clear from Dover and “Expelled” that the ID promoters are specifically targeting YECs and OECs in desperate hope that they infer their particular fairy tale out of all that “don’t ask, don’t tell what the designer did, when or how.”

I am an agnostic, if that helps and I am neither a YEC or OEC. I thought "Expelled" was a piece of crap and I gave up fairy tales when I was seven.

Sylvilagus · 21 February 2009

Charlie Wagner said: My interpretation of this study is that this is prima facie evidence for ID:

Laib JA, Marin JA, Bloodgood RA, Guilford WH. The reciprocal coordination and mechanics of molecular motors in living cells. Molecular motors in living cells are involved in whole-cell locomotion, contractility, developmental shape changes, and organelle movement and positioning. Whether motors of different directionality are functionally coordinated in cells or operate in a semirandom "tug of war" is unclear. We show here that anterograde and retrograde microtubule-based motors in the flagella of Chlamydomonas are regulated such that only motors of a common directionality are engaged at any single time. A laser trap was used to position microspheres on the plasma membrane of immobilized paralyzed Chlamydomonas flagella. The anterograde and retrograde movements of the microsphere were measured with nanometer resolution as microtubule-based motors engaged the transmembrane protein FMG-1. An average of 10 motors acted to move the microsphere in either direction. Reversal of direction during a transport event was uncommon, and quiescent periods separated every transport event, suggesting the coordinated and exclusive action of only a single motor type. After a jump to 32 degrees C, temperature-sensitive mutants of kinesin-2 (fla10) showed exclusively retrograde transport events, driven by 7 motors on average. These data suggest that molecular motors in living cells can be reciprocally coordinated to engage simultaneously in large numbers and for exclusive transport in a single direction, even when a mixed population of motors is present. This offers a unique model for studying the mechanics, regulation, and directional coordination of molecular motors in a living intracellular environment.

On what basis do you take this as evidence of any sort, prima facie or not, for ID? To me this looks like a biochemical process with no apparent (or otherwise)evidence of origin or type of origin. Oh, and just so I understand your point, are you using prima facie in the sense of "appears" true at first impression or in the sense as "self-evident" or in the legal sense of sufficient by itself to establish a fact or point?

John Kwok · 21 February 2009

Charlie, you come across as the most intelligent ID supporter I've stumbled upon here at PT, but you are absolutely mistaken:
Charlie Wagner said:

I try to make a point of saying that I only wish the best for those with whom I disagree on evolution and other political hot buttons.

Thanks. I also make it a point never to take these disagreements personally. I also try to avoid ideology and stick to hard science. The evidence for ID, IMHO, resides in the data itself, not in the spin put on it by the author. My interpretation of this study is that this is prima facie evidence for ID:

Laib JA, Marin JA, Bloodgood RA, Guilford WH. The reciprocal coordination and mechanics of molecular motors in living cells. Molecular motors in living cells are involved in whole-cell locomotion, contractility, developmental shape changes, and organelle movement and positioning. Whether motors of different directionality are functionally coordinated in cells or operate in a semirandom "tug of war" is unclear. We show here that anterograde and retrograde microtubule-based motors in the flagella of Chlamydomonas are regulated such that only motors of a common directionality are engaged at any single time. A laser trap was used to position microspheres on the plasma membrane of immobilized paralyzed Chlamydomonas flagella. The anterograde and retrograde movements of the microsphere were measured with nanometer resolution as microtubule-based motors engaged the transmembrane protein FMG-1. An average of 10 motors acted to move the microsphere in either direction. Reversal of direction during a transport event was uncommon, and quiescent periods separated every transport event, suggesting the coordinated and exclusive action of only a single motor type. After a jump to 32 degrees C, temperature-sensitive mutants of kinesin-2 (fla10) showed exclusively retrograde transport events, driven by 7 motors on average. These data suggest that molecular motors in living cells can be reciprocally coordinated to engage simultaneously in large numbers and for exclusive transport in a single direction, even when a mixed population of motors is present. This offers a unique model for studying the mechanics, regulation, and directional coordination of molecular motors in a living intracellular environment.

Incidentally I just fired a warning shot at PZ, reminding him that Ken Miller is not a "creationist". You can read it under comment number 29 here: http://scienceblogs.com/pharyngula/2009/02/she_really_shouldnt_be_sober_r.php

Charlie Wagner · 21 February 2009

Sylvilagus wrote:

"On what basis do you take this as evidence of any sort, prima facie or not, for ID? To me this looks like a biochemical process with no apparent (or otherwise)evidence of origin or type of origin.

Oh, and just so I understand your point, are you using prima facie in the sense of “appears” true at first impression or in the sense as “self-evident” or in the legal sense of sufficient by itself to establish a fact or point?"

Both.

The evidence resides in the interpretation of the data. These processes and systems that are described in this paper are composed of multiple structures and multiple processes that adapt means to ends. The structures support other structures, the processes support other processes and the structures and processes together support the system. All of these factors are subsequently integrated into a functional system whose goal is to carry out a single function. You can't explain why these particular parts were selected, why they're integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent.

"Look round the world: contemplate the whole and every part of it: you will find it to be nothing but one great machine, subdivided into an infinite number of lesser machines, which again admit of subdivisions, to a degree beyond what human senses and faculties can trace and explain. All these various machines, and even their most minute parts, are adjusted to each other with an accuracy, which ravishes into admiration all men, who have ever contemplated them. The curious adapting of means to ends, throughout all nature, resembles exactly, though it much exceeds, the productions of human contrivance; of human design, thought, wisdom and intelligence. Since therefore the effects resemble each other, we are led to infer, by all the rules of analogy, that the causes also resemble; and that the Author of Nature is somewhat similar to the mind of men; though possessed of much larger faculties, proportioned to the grandeur of the work, which he has executed..." - Cleanthes to Demea in David Hume (Dialogues Concerning Natural Religion)

(BTW, although Hume is alleged to have defeated this argument, in fact he was wrong. It's still a powerful defense of design in nature)

Charlie Wagner · 21 February 2009

John Kwok wrote"

"Charlie, you come across as the most intelligent ID supporter I’ve stumbled upon here at PT, but you are absolutely mistaken:"

Thank you.

And your rationalization is?

DS · 21 February 2009

Charlie wrote:

"You can’t explain why these particular parts were selected, why they’re integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent."

Allow me to translate:

I can't imagine how anything so complex could evolve, therefore it couldn't and until you can explain every little detail, I don't have to believe anything.

First, evolution is not limited by your imagination. Is it really impossible for you to imagine how response to temperature changes could be of selective value?

Second, yoiur interpretation of the data is not evidence. I don't think that these "motors" are quite as complex as you seem to think. What is described here is the coordination of the response, not the complexity of the "motor".

Third, I can imagine how such a system could evolve. Do you think that that is evidence that it did? Why is your interpretation more valid that mine? Do you have any evidence for this "intelligent designer" that your hypothesize? If not, my interpretation is that you have no viable alternative to the evolutionary explanation.

Fourth, I am sorry to hear about your health problems. I hope that you make a full recovery soon. Good luck and best wishes.

James F · 21 February 2009

Charlie, The Laib et al. study presents measurements of force exerted during bidirectional intracellular transport. Absolutely nothing in the paper invokes intelligent design. It also came out online just over a week ago. Do you have access to PNAS? Have you had a chance to read the paper carefully? I would like to pose a question that I presented to another poster here, who unfortunately refused to answer after unsuccessfully challenging my premise. There are about SEVENTEEN MILLION individual peer-reviewed scientific papers indexed at the National Library of Medicine’s database. Not a single paper refutes evolution, and not a single paper provides data in support of ID. What is the reason for this?

1. ID is based on supernatural (or otherwise untestable) causation, and thus is not science

2. There is a vast global conspiracy that has prevented even a single piece of data supporting ID from being published in peer-reviewed scientific literature

3. ID proponents are utterly incompetent at performing scientific research

In closing, I wish you well - I've lost family members to cancer and it's an awful thing to go through. One of many reasons I became a scientific researcher.

Mike Elzinga · 21 February 2009

Charlie Wagner said: You can't explain why these particular parts were selected, why they're integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent. ... (BTW, although Hume is alleged to have defeated this argument, in fact he was wrong. It's still a powerful defense of design in nature)
First of all, the challenge, by both you and Cleanthese, misrepresents what actually happens at every level of organization and complexity in nature. What happens in nature does not have to be described by teleological language, even though teleological language often gives a colorful and somewhat poetic slant to the descriptions. Many of the laws of physics can be cast in this form, but a deeper analysis reveals it to be an illusion. Chlorine and sodium do not combine with the purpose of making salt with all the properties that NaCl has. Those properties emerge. This happens at every level of complexity in the universe, from protons and neutrons out of a quark/gluon plasma, to the formation of atoms, to the formation of compounds, liquids, solids, and so on up the chains of complexity to organic systems and life. This is the most common phenomenon in Nature. Nothing we are familiar with would exist if this didn’t happen. In addition to these processes of emergent phenomena are the processes of selection that take place. These selection processes are not just associated with sorting complex living systems; these take place at all levels also. Change the temperatures and selection contingencies, and vastly different organizational structures and systems emerge. Some argue therefore that the universe is front-loaded for life; and part of the extrapolation of this argument is that some kind of intelligent deity had to do the front-loading. But then one is stuck with explaining an even more complex deity without special pleading. Happy, thriving life forms can look at themselves and their environment and think everything is beautiful and that they are special. This is the outcome of being comfortable in and consistent with the entire environment in which the creature finds itself. However, it does not necessarily mean the creature or anything else was “intelligently designed”. It’s just what the universe does, and we are simply an outcome at the end of a long chain of contingencies. That is neither good nor bad; and while we are here and are able to do so, we can be “happier” if we can just enjoy it and learn as much as we can. Besides, what business does any creature on a tiny planet in a vast universe have in complaining how some deity, whose existence it can’t verify, put the universe together? If one has a need to believe, one should also be prepared to simply trust the deity can do whatever it wants to do without apologizing to some complex assembly of atoms and molecules in its concoction.

John Kwok · 21 February 2009

You try to come across as someone sympathetic to ID who possesses some intelligence. But I concur with James F's recently posted assessment on the "strengths and weaknesses" of evolution and ID (with ID possessing all the weaknesses). I, too, have lost relatives due to cancer, so I don't want to make fun of your plight. However, I believe our objections to ID as valid science are correct. Indeed, noted philosopher of science Philip Kitcher regards it as "dead science", to which I add a substantial consideration of the motives and behavior of its advocates, especially those from the Dishonesty Institute, which is why I prefer thinking of Intelligent Design creationism as mendacious intellectual pornography:
Charlie Wagner said: John Kwok wrote" "Charlie, you come across as the most intelligent ID supporter I’ve stumbled upon here at PT, but you are absolutely mistaken:" Thank you. And your rationalization is?

mrg · 21 February 2009

John Kwok said: Indeed, noted philosopher of science Philip Kitcher regards it as "dead science" ...
I can't recall who said it but the more intriguing description was "zombie science". Dead but shuffling around and moaning, trying to pretend it has some life in it. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Charlie Wagner · 21 February 2009

Allow me to translate: I can’t imagine how anything so complex could evolve, therefore it couldn’t and until you can explain every little detail, I don’t have to believe anything.

No. It has nothing to do with complexity. I can imagine incredible complexity, for example, the Mandelbrot Set (Xn = X^2 + C). It has everything to do with organization. Complexity and/or order can be generated by random processes, organization cannot. (see my website for a complete explanation)

I can imagine how such a system could evolve. Do you think that that is evidence that it did? Why is your interpretation more valid that mine?

No. It's not.

Dan · 21 February 2009

Charlie Wagner said: The evidence resides in the interpretation of the data. ... You can't explain why these particular parts were selected, why they're integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent.
Let me get this straight: Charlie claims that he interprets the data to mean that the integration required an intelligent agent. And that his interpretation is itself evidence. This is not the way we run our courts. There is evidence, and then there is the interpretation of evidence. The interpretation is not itself evidence. Charlie claims that his personal interpretation of data that he does not present is itself evidence.

Dan · 21 February 2009

Charlie Wagner said: Complexity and/or order can be generated by random processes, organization cannot.
It is well known that evolution is not a random process. This was first pointed out in 1859, when, writing in the first edition of Origin of Species, Charles Darwin says that "mere chance ... alone would never account for so habitual and large an amount of difference as that between varieties of the same species and species of the same genus" (page 111). Richard Dawkins makes the same point in his 1986 book The Blind Watchmaker, where he concludes a long and delightful explanation (chapter 3, page 49) by pointing out that "This belief, that Darwinian evolution is 'random', is not merely false. It is the exact opposite of the truth. Chance is a minor ingredient in the Darwinian recipe, but the most important ingredient is cumulative selection which is quintessentially non-random." Why do so many people share the misconception that evolution is a random process, even after distinguished and literate scientists from Darwin to Dawkins have labored for a century and a half to dispel it?

Charlie Wagner · 21 February 2009

Absolutely nothing in the paper invokes intelligent design.

Nor does anything in the paper invoke random mutation and natural selection. It's in the interpretation of the data itself. I discussed the false assumptions (serial homology and its relationship to phylogeny) above. Yes I have access to PNAS and yes, I read the whole paper. In fact, I quoted from it.

Not a single paper refutes evolution, and not a single paper provides data in support of ID. What is the reason for this?

Nor do I. Evolution is a fact. It is the mechanism that I take issue with. NS is a mechanism. So is ID. I prefer the latter.

ID is based on supernatural (or otherwise untestable) causation, and thus is not science.

It is not based on any supernatural entity. The notion of intelligent design has been hijacked by those with a religious agenda to promote. Almost all proponents of ID do in fact have a religious agenda and they must be stopped from disseminating their ideology in public schools. The trick is to separate legitimate scientific investigation of intelligent design from religious creationism. As it stands now, most scientists are afraid to even talk about the subject for fear of being misquoted or having their own words used as religious propaganda. This has had a chilling effect on legitimate science that may take decades to repair. Ideology has no place in any public school science classroom and it must be stopped wherever it occurs. But one must also recognize that there have also been zealots on the evolutionist side who want to teach mechanisms of evolution that have no empirical support. The answer is simple and clear. Religious creationism must be eliminated from school curriculums and darwinian evolution must be taught not as fact, but in it's historical context. There is enough factual science, from anatomy to zoology to fill any school's scientific curriculum with non-controversial, factual science. Any teaching of darwinian evolution or creationism or "the controversy" is nothing more than a waste of time that could be better spent on real science.

There is a vast global conspiracy that has prevented even a single piece of data supporting ID from being published in peer-reviewed scientific literature 3. ID proponents are utterly incompetent at performing scientific research In closing, I wish you well - I’ve lost family members to cancer and it’s an awful thing to go through. One of many reasons I became a scientific researcher.

Thank you. There is a conspiracy to debunk ID. Here's the proof:

Woodstock of evolution? That's how Nature descibes a meeting among sixteen leading biologists at the Konrad Lorenz Institute for Evolution and Cognition Research in Altenberg, Austria, 10-13 July 2008. The purpose of the meeting was to go beyond the modern synthesis that has held evolutionary theory together for more than sixty years. This is necessary because the existing theory leaves much unexplained — * "When the public thinks about evolution, they think about the origin of wings and the invasion of the land," says Graham Budd, a palaeobiologist at the University of Uppsala, Sweden. "But these are things that evolutionary theory has told us little about." * "The modern synthesis is remarkably good at modelling the survival of the fittest, but not good at modelling the arrival of the fittest," comments Scott Gilbert, an evo-devo researcher at Swarthmore College in Pennsylvania. The participants agreed that such shortcomongs must be carefully downplayed (see right), because "creationists seize on any hint of splits in evolutionary theory or dissatisfaction with Darwinism." Apparently darwinism is still gridlocked and real reform is not imminent.

Evidence for ID is found in the data itself, not in the spin put on it by researchers. Thousands of papers each year contain data supportive of ID

Mike Elzinga · 21 February 2009

It has everything to do with organization. Complexity and/or order can be generated by random processes, organization cannot. (see my website for a complete explanation)

— Charlie Wagner
Unless you have some unusual definition of “organization”, it’s not clear what you are saying. Yet you do make a distinction between order and organization. Nucleons, atoms, galaxies, solar systems, tornadoes, hurricanes, eddies in fluids, the list goes on and on, are all examples of organization (not just order) emerging from stochastic processes. It happens because of the dissipation of energy and the various types of gravitational, electromagnetic, or weak, or strong force interactions among the constituents of these systems. Organization is dynamic and coordinated. Order, such as a crystal lattice, might simply be static but it still can have great significance when it determines the emergent phenomena that govern, say, how electrons in the ordered lattice behave (e.g., conduction bands and valence bands). Organization can arise because of interactions that emerge as the constituents of a system condense into order. Superconductivity is a nice example. At just the right temperatures, and with the right kind of lattice structures, the interactions of the lattice vibrations of a solid with electrons can cause a dramatic increase in the organization of the electrons into what are called Cooper pairs which then condense into a superconducting state. It is a highly choreographed and coordinated dance among constantly changing electron partners. There has recently been discovered an analogous “super-insulating” state. There is nothing trivial about this organization. It can lead to coordinated behaviors across vast stretches of space and time. This, in turn, becomes another source of emergent phenomena that can influence the subsequent development of a complex system and further emergence of higher levels of organization. I suspect that may people are so used to these properties in nature that they don’t stop to think about the significance of them and where they come from. Those who have worked in condensed matter physics don’t take this stuff for granted. They are hit with it every day and strive to understand the links from one level of complexity to another. It’s everywhere, but unfortunately not noticed by many who think the universe is just a set of random, elastic collisions among featureless particles. Nothing could be farther from the truth.

James F · 21 February 2009

Charlie Wagner said:

Not a single paper refutes evolution, and not a single paper provides data in support of ID. What is the reason for this?

Nor do I. Evolution is a fact. It is the mechanism that I take issue with. NS is a mechanism. So is ID. I prefer the latter.
Thank you for your response, Charlie. I don't have the time at the moment for a proper reply, but one thing I'd like to know is your definition of ID. As the Discovery Institute promotes it, it is the idea that some biological structures are too complex to have arisen through natural processes (or, at the very least, not through evolution, although this raises the question of what process did give rise to these structures, which they never answer). So it's not a mechanism at all - I hadn't quite thought of it in these terms before, but ID is a non-mechanistic concept. Even if you invoke an intelligent agency that is not supernatural, like superintelligent extraterrestrials, there is still no known, testable mechanism. Thanks in advance - my curiosity is definitely piqued!

Henry J · 22 February 2009

Something to consider here is how much and what kind of "intelligence" is allegedly involved. The gene pool of an evolving species does have some of the attributes associated with intelligence: a way of trying out different things, and a way of remembering the ones of those that worked better than the others, and a way of fine tuning the efficiency of something that does work (by weeding out the variations that work less well than others).

There's also the point that James just made - "Intelligent Design" itself is not a mechanism; the engineer(s) that invented the design still have to implement it using some mechanism(s).

An additional point is that engineers (at least the ones I know anything about) tend to borrow ideas from other fields. In "lineages" of machinery, one expects to see devices copied from one area into another. Cars for example have computer chips, air conditioning, upholstery, lights, radios, etc., all copied from other areas of technical development.

So if living things were being engineered, one would expect to see cases in which some complex structure that apparently evolved in one branch of one taxonomic group, but was then reused intact in a branch of a separate taxonomic group. If that happened too often, the whole taxonomic group concept would never have worked in the first place.

Henry

Charlie Wagner · 22 February 2009

Unless you have some unusual definition of “organization”, it’s not clear what you are saying. Yet you do make a distinction between order and organization.

Organization is not the same as order. One must be careful not to confuse organization with order. There’s a lot of talk about ordered systems in the non-living world, snowflakes, tornadoes, etc. but this is not the issue. Order is simply a condition of logical or comprehensible arrangement among the separate elements of a group. Like putting files in alphabetical order or using a sieve to separate items by size. Organization is a much different structure in which something is made up of elements with varied functions that contribute to the whole and to collective functions of the system. Ordered systems can result from non-intelligent processes, as has been seen many times and cited by numerous examples. A mousetrap has a quality called organization, which is much different from complexity or order. Each part of the mousetrap, the platform, the holding bar, the spring, the hammer and the catch each have specific functions. And each of these functions are organized in such a way that they support the other functions and the overall function of the mousetrap, which is to catch mice. The function of the platform is to hold the parts, but it's there ultimately to facilitate the process of mouse catching. The function of the spring is to exert a force on the hammer, but it's ultimate goal is to enable the process of mouse catching. All of the parts have functions that not only support the other functions, but ultimately support the overall function of the device. This type of organization is not obtainable without insight, and insight always requires intelligence. There is no way that these parts could be assembled in such a manner without insight. A mousetrap is a simple machine, made up of several structures and processes and exists for a purpose. The construction of the mousetrap was initiated with intent, and fashioned for a purpose. Living organisms are similarly machines, with structures and processes that work together to create a function. In fact, all complex, highly organized machines in which means are adapted to ends are the product of intelligent design. The important point is that the adaptation of means to ends, the adaptation of structure and process to function requires insight. A mousetrap is unevolvable without intelligent input, not because you can't take it apart without it losing it's function, it's unevolvable because you can't put it together in the first place using only random, non-directed, accidental occurrences. The selection of the parts, the configuration in which they're aligned, the assembly into one unit all require intelligent decisions at every step of the way. Similarly, living organisms show the same characteristics. It's not that you can't remove parts and lose total function, it's that you can't explain why these particular parts were selected, why they're integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent.

Charlie Wagner · 22 February 2009

but one thing I’d like to know is your definition of ID.

See my website for a complete explanation: http://www.charliewagner.com/casefor.htm

DS · 22 February 2009

Charlie wrote:

"This type of organization is not obtainable without insight, and insight always requires intelligence. There is no way that these parts could be assembled in such a manner without insight."

This might be true of systems that are designed by intelligent agents, but it has been demonstrated that this is not true of living systems that are subject to cumulative selection. Claiming that this is true without any evidence is worthless.

"A mousetrap is unevolvable without intelligent input, not because you can’t take it apart without it losing it’s function, it’s unevolvable because you can’t put it together in the first place using only random, non-directed, accidental occurrences. The selection of the parts, the configuration in which they’re aligned, the assembly into one unit all require intelligent decisions at every step of the way."

This is just a twist on the old irreducible complexity argument. Once again, this has been shown not to be true of living systems. The argument is completely worthless. You can claim that something could not evolve all you want but that will never make it true.

Once again, my interpretation of the evidence is that living systems evolved. Why do you think that your interpretation is superior? What specific evidence, (other than the unfounded supposition that something could not possibly have evolved), do you have to support your idea? What predictions do you make that can be tested by the evidence? What do you predict that is not predicted by evolutionary theory? Science is not simply a matter of claiming that you are right until you get everyone to agree with you.

Mike Elzinga · 22 February 2009

Organization is not the same as order. One must be careful not to confuse organization with order. There’s a lot of talk about ordered systems in the non-living world, snowflakes, tornadoes, etc. but this is not the issue.

— Charlie Wagner
I think if you read my last post carefully, you will see that there is a difference and that I suspected that you were making a distinction.

Organization is a much different structure in which something is made up of elements with varied functions that contribute to the whole and to collective functions of the system. Ordered systems can result from non-intelligent processes, as has been seen many times and cited by numerous examples.

You seem to be one of the most articulate individuals in the ID camp in expressing a common misconception that many people in the ID community have. But as I suspected, your definition of organization has an implicit teleology built into it. You are assuming that organization results from purpose or a planned layout to implement a purpose. You have borrowed from what humans do when they want to make a bunch of things work in some kind of coordination. They “organize” stuff to make a pattern (order) or perform a task. In nature, organization comes from interactions among constituents of a system that result in coordinated or patterned behavior. Those interactions are from gravitation, electromagnetism, strong force, weak force exchanges. Depending on the masses and “restoring forces” in the system, resonant phenomena can occur that throw the whole system into a dramatic synchronization of the constituents of the system. Not only does the system look ordered, it behaves dynamically in a highly coordinated fashion. As I mentioned before, this is the most common phenomenon in nature, and it has nothing to do with purpose. All that is needed are matter, kinetic energy, and potential energy. That last requirement means that there are interactions among the particles that make up the system; but this is generally the case with most of the matter we see in the universe, especially that matter that makes up us. Crucial to understanding this is the fact that energy is flowing throughout the system in the form of matter or photons or gravitons. Some of that energy is escaping to infinity. Energy is being transferred among the constituents of the system. The system can be interacting with other systems. Even the condensation of atoms into a crystals proceeds from randomness through various stages of organization (collective behavior) into spatial order. As atoms come relatively near each other, their electron clouds distort. As a result, photons are emitted that carry away energy. Kinetic energy can also be released by collisions with other atoms that may leave the system, carrying that extra energy away with them. Now the remaining atoms have less kinetic energy and begin to move in and even more coordinated fashion because the electromagnetic interactions are a larger percentage of their total energy. Once they begin to “lock together”, the atoms immediately take on emergent properties beginning to characterize a liquid or a solid; they can transmit mechanical waves (phonons) that become an additional mechanism that carries away energy. And so the process continues until a regular array is established. But now this array has a myriad of new properties that determine how electrons move around in it, how it interacts with electromagnetic radiation (photons), how it responds to various other interactions with other atoms and molecules in other systems, and so on. Emergence and organization all the way; and this is just the simple stuff.

Charlie Wagner · 22 February 2009

Dan wrote:
"Why do so many people share the misconception that evolution is a random process, even after distinguished and literate scientists from Darwin to Dawkins have labored for a century and a half to dispel it?"

It's simple...they're wrong! (Darwin and Dawkins)

Evolution is a fact. Darwin overstated the power of natural selection. Even HE knew that!

Natural selection can only act on pre-existing variation. It has no creative power by itself.

Variation arises from random mutation.

Therefore the whole process is random.

Random events can NEVER create organization.

Charlie Wagner · 22 February 2009

Why do you think that your interpretation is superior? What specific evidence, (other than the unfounded supposition that something could not possibly have evolved), do you have to support your idea? What predictions do you make that can be tested by the evidence? What do you predict that is not predicted by evolutionary theory? Science is not simply a matter of claiming that you are right until you get everyone to agree with you.

All of your questions are answered here: http://www.charliewagner.com/casefor.htm

Charlie Wagner · 22 February 2009

Mike Elzinga wrote:

But as I suspected, your definition of organization has an implicit teleology built into it. You are assuming that organization results from purpose or a planned layout to implement a purpose.

Exactly right! What's the problem with that?

Lew · 22 February 2009

The Contributing editor for book reviews for the journal Politics and the Life Sciences is Richard Sherlock of Utah State University and the author of "Mormonism and Intelligent Design". Quoting from the conclusion of the paper:
In my view, Latter-day Saints as well as serious Christians generally should be sympathetic to and supportive of intelligent design. We must reject materialism. We must accept God's intervention in nature. Finally, we must hold that God's action in nature is at times plainly visible. Once these core convictions are held as control beliefs, intelligent design cannot be denied.
This probably explains why this journal publishes book reviews by ID proponents.

Lew · 22 February 2009

Sorry, on my previous post, the link is working correctly. You can manually get to the paper by selecting v18, no 2. It's the third paper in the issue.

Charlie Wagner · 22 February 2009

Mike Elzinga wrote:

In nature, organization comes from interactions among constituents of a system that result in coordinated or patterned behavior. Those interactions are from gravitation, electromagnetism, strong force, weak force exchanges. Depending on the masses and “restoring forces” in the system, resonant phenomena can occur that throw the whole system into a dramatic synchronization of the constituents of the system. Not only does the system look ordered, it behaves dynamically in a highly coordinated fashion.

I think you are still not clear on the difference between "order" and "organization". You are describing "ordered systems" not "organized systems". Read the chapter again! ;-) http://www.charliewagner.com/casefor.htm

Charlie Wagner · 22 February 2009

What is Organization?

A mousetrap has a quality called organization, which is much different from complexity or order. Each part of the mousetrap, the platform, the holding bar, the spring, the hammer and the catch each have specific functions. And each of these functions are organized in such a way that they support the other functions and the overall function of the mousetrap, which is to catch mice.

The function of the platform is to hold the parts, but it's there ultimately to facilitate the process of mouse catching. The function of the spring is to exert a force on the hammer, but it's ultimate goal is to enable the process of mouse catching. All of the parts have functions that not only support the other functions, but ultimately support the overall function of the device. This type of organization is not obtainable without insight, and insight always requires intelligence.

There is no way that these parts could be assembled in such a manner without insight. A mousetrap is a simple machine, made up of several structures and processes and exists for a purpose. The construction of the mousetrap was initiated with intent, and fashioned for a purpose.

Living organisms are similarly machines, with structures and processes that work together to create a function. In fact, all complex, highly organized machines in which means are adapted to ends are the product of intelligent design. The important point is that the adaptation of means to ends, the adaptation of structure and process to function requires insight. A mousetrap is unevolvable without intelligent input, not because you can't take it apart without it losing it's function, it's unevolvable because you can't put it together in the first place using only random, non-directed, accidental occurrences.

The selection of the parts, the configuration in which they're aligned, the assembly into one unit all require intelligent decisions at every step of the way. Similarly, living organisms show the same characteristics. It's not that you can't remove parts and lose total function, it's that you can't explain why these particular parts were selected, why they're integrated together in just such a way and how they were assembled from raw materials without invoking an intelligent agent.

DS · 22 February 2009

Charlie wrote:

"Random events can NEVER create organization."

Prove it.

stevaroni · 22 February 2009

Therefore the whole process is random. Random events can NEVER create organization.

Untrue, Charlie. Lots of random processes create organized results. did you never made rock candy as a child? Both the atoms in solution and the evaporation itself act totally randomly, yet teh result is always an organized cystal, millions of atoms on a side. You can never predict, of course, where any individual atom will wind up in the crystal, but you can say with utmost certainty that there will be a crystal at the end of the day. A simple example, to be sure, but an experiment that can be run in the space of a coffee cup in the space of a warm afternoon. What evidence do you have that given billions of more days and trillions of trillions of times as many atoms reacting you can't get more organization? All you seem to have is a sense of personal incredulity, but no real evidence to back up you assertions. Other people had personal incredulity about a round earth, undiscovered continents, heavier than air flight, and the existence of atoms. The track record of incredulity as an investigative tool is abysmal.

DS · 22 February 2009

Nice try Charlie. That web site proves conclusively that no human designed machine can arise spontaneously in a box in a few days. That is not the issue. If that is the best you have got then I conclude that you have no evidence, that you have no hypothesis and that you have nothing but personal incredulity to support your position. Nice try at spoofing the scientific method though.

If you really think that this is a reasonable argument then here is my position. I have never seen anyone or anything design or produce a living organism. I cannot even imagine anyone or anything powerful enough or smart enough to do so. I have studied the natural processes by which living things evolve and I believe that they can indeed evolve increasing complexity and so called irreducibly complex systems. I cannot believe that anyone could doubt this so I don't believe that you really believe that it can't happen without intelligent intervention.

Even if I had not one bit of evidence to support my position, my idea would be at least as valid as yours. Why should anyone prefer your position?

Charlie Wagner · 22 February 2009

Lots of random processes create organized results. did you never made rock candy as a child? Both the atoms in solution and the evaporation itself act totally randomly, yet teh result is always an organized cystal, millions of atoms on a side.

The result is an ordered crystal. You still don't get it. Read the chapter again.

Mike Elzinga · 22 February 2009

Charlie Wagner said: Mike Elzinga wrote:

In nature, organization comes from interactions among constituents of a system that result in coordinated or patterned behavior. Those interactions are from gravitation, electromagnetism, strong force, weak force exchanges. Depending on the masses and “restoring forces” in the system, resonant phenomena can occur that throw the whole system into a dramatic synchronization of the constituents of the system. Not only does the system look ordered, it behaves dynamically in a highly coordinated fashion.

I think you are still not clear on the difference between "order" and "organization". You are describing "ordered systems" not "organized systems". Read the chapter again! ;-) http://www.charliewagner.com/casefor.htm
Charlie; Please don’t patronize me about order and organization. I am a condensed matter physicist, and I have spent years studying physical systems like these. The entire physics, chemistry, and biology community knows what these words mean and how these systems behave. You can’t begin to imagine what is already known. Simply telling the science community that they are using the words incorrectly because they don’t happen to agree with the definitions you would like to use doesn’t change how nature works. I gave you a simple example that should have been easy to understand. However, if you don’t understand even simple systems, I’m not sure how anyone is going to explain examples of much more complicated systems of polymers, amino acids, proteins, and the behaviors of these systems in the presence of water and other chemicals. Organic chemistry, biophysics and biochemistry are huge fields with people devoting entire research careers to subfields of these. You make it appear that the ID community would like to hide all the information known about how nature behaves in all these fields.

Charlie Wagner · 22 February 2009

I have never seen anyone or anything design or produce a living organism. I cannot even imagine anyone or anything powerful enough or smart enough to do so.

I have. It's called DNA. It contains all the information needed to produce a living organism. The question is, where did the DNA come from?

Charlie Wagner · 22 February 2009

Mike Elzinga wrote:

Please don’t patronize me about order and organization.

I didn't intend for it to be patronizing but I was getting the feeling that I wasn't getting my point across. How do you (and the entire physics, chemistry and biology community) define "organization"? How is it different from "order"?

DS · 22 February 2009

So then I guess you think that DNA is itself intelligent. If not, then that doesn't get you anywhere. Just exactly how do you think that DNA designs living things? Does it have foresight and planning? How can it produce irreducibly complex systems if it isn't intelligent? So then, nonintelligent processes are capable of producing irreducibly complex systems. There goes your agrument.

You definately don't need intelligence to explain the origin of DNA. Do you really want to state that that is all that is required in order for life to evolve? Exactly why couldn't any sequence of DNA evolve? If mutations are random, wouldn't every sequence eventually be produced? If you add cumulative selection it looks like a pretty good explanation.

By the way, you might want to tell the creationists that DNA contains all of the information necessary to produce an organism. Some of them apparently don't want to believe it.

Mike Elzinga · 22 February 2009

Charlie Wagner said:

Lots of random processes create organized results. did you never made rock candy as a child? Both the atoms in solution and the evaporation itself act totally randomly, yet teh result is always an organized cystal, millions of atoms on a side.

The result is an ordered crystal. You still don't get it. Read the chapter again.
The atoms are ordered. But they could never have become that way without organized behaviors among them as they condense into that state. You are also overlooking all the emerged dynamic activity going on within the crystal. Depending on the atoms, traces of impurities, slight defects and discontinuities, there can be dramatic differences in what takes place within these crystals in response to interactions with other systems. I think you are in over your head here, Charlie. That’s no excuse to make it hard on others who want to understand how nature behaves.

stevaroni · 22 February 2009

(from dictionary.com)

Ordered: neatly or conveniently arranged; well-organized: an ordered office; done according to specific principles or procedures: an ordered method of assembling the parts.

Organized: having a formal organization or structure, esp. to coordinate or carry out for widespread activities: organized medicine; organized crime.

Um, they both seem to be flavors of "organized structure", am I missing something, Charlie?

stevaroni · 22 February 2009

By the way, Charlie, I did read your page, but your explanation of the difference (under the Nelsons Law section) seems a distinction without a difference.

As to your example of the bicycle not assembling itself, it's not incidental that mechanical parts are known to be inert.

The same cannot be said of chemical compounds, especially the subset of simple chemical compounds that make up amino acids.

A room full of bike parts will sit there for eternity. A warm swimming pool into which you throw a couple of buckets of amino acids and stir once in a while will have a considerable amount of activity.

In fact, you can actually calculate the the amount of activity, and the mean length of time till some known self-replicating molecule is formed ( and that doesn't even begin to account for all the possible self-replicating molecules ).

Mike Elzinga · 22 February 2009

Charlie Wagner said: Mike Elzinga wrote:

Please don’t patronize me about order and organization.

I didn't intend for it to be patronizing but I was getting the feeling that I wasn't getting my point across. How do you (and the entire physics, chemistry and biology community) define "organization"? How is it different from "order"?
Order is a spatial and/or temporal arrangement of matter or physical events. Organization is a dynamic set of processes taking place over time and/or space that involves the coordinated motions and/or behaviors of the constituents of a physical system. The constituents can be particles such as electrons, nucleons, atoms, molecules, or whole systems of atoms and molecules constituting compounds, solids, liquids, gases, plasmas, organic strings and membranes, etc.. Organization occurs because most particles and systems in the universe are never entirely isolated form each other. There are nearly always gravitational and/or electromagnetic interactions among them (in the case of nucleons, there are the “strong” and “weak” interactions). In relatively close proximity, they can interact strongly. Nucleons, electrons, atoms, and matter in general have mass. The fact that they have mass and exert forces on each other leads to all sorts of sudden, complex coordinated behaviors. Self-organized criticality is a particularly significant term used to describe the sudden, spontaneous occurrence of highly coordinated behaviors in complex (and even relatively simple) systems. This kind of behavior occurs not only spontaneously and very suddenly, it often occurs when conditions in the system (such as energy and momentum exchanges) hit on very precise values. Then the whole system flips into an extremely organized state in which all the constituents are coordinating their activities with each other through their exchanges of energy and momentum. The results can also show up as spatial and temporal ordering, but these are simply subsets of all the kinds of coordination that can occur. Even an apparent static spatial ordering in a crystal hides the coordinated interactions that are occurring within, depending on what the crystal is made from. In addition to all this, there are quantum mechanical rules that can determine what kinds of things can or cannot happen. However, as systems become mesoscopic and macroscopic, emergent properties such as stiffness, mass, electronic properties, etc. can also become determiners of how subsequent development of a system will occur. Polymers, membranes, lipids, proteins are all extremely complex and have very sensitive electrical and chemical responses to their environments and to themselves. This leads to some very surprising self-organized behaviors. Elementary science, especially physics, attempts to simplify things to illustrate basic laws to beginning students. Unfortunately it gives the impression that interactions among particles are insignificant, and it doesn’t convey to the student just how important they are. In the real world, making things simple in research is extremely difficult. It is extremely difficult to remove all unwanted interactions with the surrounding environment in order to study simple systems and simple interactions.

Charlie Wagner · 22 February 2009

Mike Elzinga wrote:

"Organization is a dynamic set of processes taking place over time and/or space that involves the coordinated motions and/or behaviors of the constituents of a physical system. The constituents can be particles such as electrons, nucleons, atoms, molecules, or whole systems of atoms and molecules constituting compounds, solids, liquids, gases, plasmas, organic strings and membranes, etc."

Well, the problem is clear; we're using different definitions of organization. Organization is a word like "entropy". It lacks intuitive clarity. Perhaps we need a different word!

That's why I was very careful to define my use of the word. Simply put, I mean something made up of elements with varied functions that contribute to the whole and to collective functions.

Organized systems contain structures and processes. The structures support other structures and other processes. The processes support other processes. Organized systems adapt means to ends.

The chloroplast is a perfect example of the integration of structure and processes all working together to produce a function: the synthesis of glucose.

Organized systems are made up of structures and processes integrated in such a way that they not only support each other, but they contribute to the overall function of the system. This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There's simply no way to get around that basic point.

DS · 22 February 2009

Charlie wrote:

"The chloroplast is a perfect example of the integration of structure and processes all working together to produce a function: the synthesis of glucose."

You do know that there is a very good evolutionary explanation for the origin of the chloroplast don't you? Are you claiming that it is irreducibly complex and that it could not possibly have evolved?

"This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There’s simply no way to get around that basic point."

This is at least the fourth time that you have claimed this without any evidence whatsoever. For the last time, either try to demonstrate that this is true somehow or stop making the claim. No one will be convinced by mere repetition.

Dan · 22 February 2009

Charlie Wagner said: That's why I was very careful to define my use of the word. Simply put, I mean something made up of elements with varied functions that contribute to the whole and to collective functions.
All right, but what do you mean by "collective functions" or even "functions"? For example, when I leave my office window open, then I put a rock on a pile of papers. As far as the rock is concerned, the function of the papers is to support the rock. As far as the paper is concerned, the function of the rock is to crown the papers. As far as I'm concerned, the function of the rock is to keep the papers from scattering. As far as the president of the US is concerned, none of these things have function because he doesn't even know that I use a paperweight. You can multiply the examples a millionfold: As far as the bus passenger is concerned, the function of a bus is transportation. As far as a bus company is concerned, the function of a bus is to make money. As far as the car driver behind the bus is concerned, the function of a bus is to slow him down.

Dan · 22 February 2009

Charlie Wagner said: Variation arises from random mutation. Therefore the whole process is random. Random events can NEVER create organization.
Analogous statements: The transport of oxygen by blood arises from iron in hemoglobin. Therefore the whole blood is iron. Iron can NEVER create organization.

mrg · 22 February 2009

I think we're seeing the Paley Fallacy all over again, just phrased in another
fashion:

"Living things have a level of organization that nonliving things do not ... "

"Yah, I would agree with that as a rule ... "

" ... except for the nonliving artifacts that were created by humans ... "

"Ahhhh ... I think we're getting set up for Reasoning By Analogy here."

" ... and so it is obvious that living things must have been created by a superhuman intelligence."

"Hang on. That argument doesn't even address the possibility that the organization of living things might be due to some natural
process. It simply uses the analogy to jump to a conclusion without any
real consideration of evidence."

The Paley Fallacy is NOT thinking something was Designed when it wasn't. The
Paley Fallacy is simply assuming that because something is complicated (irreducibly complex, organized, whatever) it must have been Designed. Maybe
it was, maybe it wasn't, what does the evidence say? The complexity in itself
does not answer that question.

Extrapolating from the
fact that humans build complicated objects to proclaiming Design in the Universe
is seeing the Universe through a mirror that reflects our ways of doing things when,
as all agree ... the Universe is clearly not run by humans.

Cheers -- MrG / http://www.vectorsite.net/gblog.html

Flint · 22 February 2009

The Paley Fallacy is simply assuming that because something is complicated (irreducibly complex, organized, whatever) it must have been Designed.

Backwards. I doubt we'll ever get it if we keep inverting it like this. Let's turn it around. WE, our exalted selves, were (ahem) designed by a benevolent intelligence to be rulers of all things. The Bible tells us so, therefore it can't be wrong. Well, what exactly is it about us that makes us so special, outside of this revelation? Well, we're very complicated. So complication must imply intelligent design, since we WERE designed. What else? Well, we're alive, so all living things must also have been designed. And all of our parts work in harmony together (except those that don't), which is similar to things we design, implying that our foregone conclusion has yet additional support. What's important is that Paley didn't reason TO design, he reasoned FROM what he could not doubt. The task here isn't to derive a conclusion from the evidence, but to filter the evidence through the conclusion to ratify our preferences and needs. And since Charlie's assertions are defeated by even a hazy inkling of what feedback is, he must necessarily pretend it doesn't exist. It simply won't fit through the filter.

mrg · 22 February 2009

Ah, I was suspecting so, but what we're seeing is the infamous "Law Of Conservation Of Information (LCI)" all over again: RANDOM PROCESSES CANNOT CREATE INFORMATION. ONLY AN INTELLIGENCE CAN CREATE INFORMATION.

Really? In Darwinian evolution, random mutations create information. The Grim Reaper then decides whether that information is useful or at least harmless and keeps it, or if it's harmful and then deletes it via extinction. The Grim Reaper
has made a 0 or 1 decision, enabled by the fact that living things have an interesting property that nonliving things do not: DEATH. Any calculation that can be performed can be performed as a sequence of simple 1 or 0 calculations; the Grim Reaper never sleeps, never tires, and over the aeons can potentially build up a great deal of elaboration.

Look in Wikipedia. There is no such thing as the LCI. It's a rephrasing of the Paley Fallacy by Darwin-bashers to make it sound "sciency". I keep wondering who was the first to pull it out of the fanny pack.

Cheers -- MrG / http://www.vectorsite.net/gblog.html

mrg · 22 February 2009

Another interesting thing here ... ID and evolution are not strongly compatible concepts. What point is there in Designing dodos? What point is there in Designing the same sorts of forms over and over again -- parallel evolution of sabrecats for example, or sharks and dolphins, or bats and birds -- or Designing different forms to do the same sorts of things -- antelopes and kangaroos? Why let them all go extinct and start over again? Why not just Design them right in the first place and let them go on?

One could of course invoke whim or stupidity, but then the supposedly "obvious" nature of Design suddenly becomes less obvious. One could claim that the real reason was that the Designer was trying to trick us into believing that evolution by an unplanned process (read "Darwinian evolution") was for real.

Cheers -- MrG / http://www.vectorsite.net/gblog.html

Mike Elzinga · 22 February 2009

Well, the problem is clear; we’re using different definitions of organization. Organization is a word like “entropy”. It lacks intuitive clarity. Perhaps we need a different word!

— Charlie Wagner
Indeed, but the scientific community tries to use words to describe what nature actually does. You and the ID community, on the other hand, appear to be playing with etymology to convince people that nature cannot do what it does right in front of your face every day. And by the way, entropy is extremely well-defined in physics. The ID/Creationist community has been mangling the definition of entropy for decades; and that hasn’t changed how the universe works either. Fortunately for the scientific community, etymology doesn’t determine what works in nature. It has simply prevented a large number of lay people from learning what science knows. But I guess that is part of the objective of the ID/Creationist community.

Frank J · 23 February 2009

You and the ID community, on the other hand, appear to be playing with etymology to convince people that nature cannot do what it does right in front of your face every day.

— Mike Elzinga
Our good buddy FL gave away the whole game when he admitted that human conception is a design actuation event. All that hard work by Behe, Dembski et. al. to say that designs are actuated at some unspecified time and place, and by some unspecified method (all those "unspecifieds" plus that of the designer's identity presumably to keep as many "kinds" of evolution-denier in the big tent as possible), but conveniently out of reach from direct observation, is all for nought.

Misha · 23 February 2009

Charlie Wagner said: Living organisms are similarly machines, with structures and processes that work together to create a function. In fact, all complex, highly organized machines in which means are adapted to ends are the product of intelligent design. The important point is that the adaptation of means to ends, the adaptation of structure and process to function requires insight.
Charlie, I believe I have found your issue. You seem to be overlooking the past for the present. According to you, all these complex biological machines are "means adapted to ends." However, this is not right. No one is claiming that random mutation devises a plan to tackle a certain "ends" by adapting its "means." Adaption is simply a beneficial consequence of mutation. There is no guarantee that organisms will adapt to the ends. That is why we have extinctions. The only guarantee is that organisms will mutate by way of imperfect reproduction. If this mutation results in a characteristic that is beneficial, then great. If not, then changes are it won't pass on the information. You see a biological system and claim that it could not have evolved because all of its "means" could not have adapted to THIS "ends" without guidance. The problem is that you are looking at it from the final solution. THIS "ends" is not the only viable "ends." Life could have taken many paths, this is just the one that happened. Biological systems do NOT evolve to perform a function. The function itself is a consequence of the mutation. You see a bunch of animals with eyes and think that evolution must have put all these parts together to create an eye. But that is not the case. The eye was a progression of mutations. It took millions of years but after a while these mutations compiled together. One layer of the compilation more beneficial than the last. And eventually, we have eyes. Eyes did not HAVE to evolve. My cornea, retina, iris, pupil and optic nerve did not come together to form my eye. Piece by piece they benefitted my ancestors, my eyes just happen to be the result. I just think you are caught up in the idea that all of these biological systems MUST have had a purpose/direction. But instead, they were mutations. The result was just a beneficial capability. Their purpose arose out of their new function.

stevaroni · 23 February 2009

What’s important is that Paley didn’t reason TO design, he reasoned FROM what he could not doubt.

I never understood why Paley was so influential anyhow. He made an obvious logical mistake arguing apples and oranges. Despite what the creobots argue, the reason Paley was able to see a pocketwatch and understand instantly that it was the product of intelligence wasn't because it was so complex, it was because a pocket watch was so artificial. All the components were known to be man-made. If Paley had been strolling through a meadow on a planet where mechanical devices were observed to run wild through the woods, fighting and mating and producing other mechanical devices all on their own, a planet where you could put two grandfather clocks in a room alone and soon you'd come back to find them nursing a new brood of wristwatches, a planet where you couldn't turn over a rock in your garden without disturbing a nest of larval machine screws, his argument falls apart. Thing is, as far as all of biology goes, he is on such a planet.

Kevin B · 23 February 2009

mrg said: Ah, I was suspecting so, but what we're seeing is the infamous "Law Of Conservation Of Information (LCI)" all over again: RANDOM PROCESSES CANNOT CREATE INFORMATION. ONLY AN INTELLIGENCE CAN CREATE INFORMATION. Really? In Darwinian evolution, random mutations create information. The Grim Reaper then decides whether that information is useful or at least harmless and keeps it, or if it's harmful and then deletes it via extinction. The Grim Reaper has made a 0 or 1 decision, enabled by the fact that living things have an interesting property that nonliving things do not: DEATH. Any calculation that can be performed can be performed as a sequence of simple 1 or 0 calculations; the Grim Reaper never sleeps, never tires, and over the aeons can potentially build up a great deal of elaboration.
Do you think that there might, perhaps, be something of "Can a tree fall in the woods if there is no one to see it fall?", or of Schrodinger's Cat and collapsing wavefunctions? It could be argued that the "information" associationed with this "great deal of elaboration" exists only in potentia until it is actually observed by an intelligence. If this were so, the whole idea of "conservation of information" vanishes in a cloud of Heisenberg.

Charlie Wagner · 23 February 2009

"All right, but what do you mean by “collective functions” or even “functions”?

There are two kinds of function.

1.The kind of action or activity proper to a person, thing; the purpose for which something is designed or exists.

and

2. Co-opted functions; functions that are given to objects by intelligent choice, and for which they were not originally intended.

Your examples are co-opted functions. If I use a brick to hold a door open, that is not its function. It is co-opted for that purpose by intelligent choice. It's actual function is still to construct walls. Co-opted functions are only functions in the context of the viewer.

Dan · 23 February 2009

Charlie Wagner said: "All right, but what do you mean by “collective functions” or even “functions”? There are two kinds of function. 1.The kind of action or activity proper to a person, thing; the purpose for which something is designed or exists. and 2. Co-opted functions; functions that are given to objects by intelligent choice, and for which they were not originally intended. Your examples are co-opted functions. If I use a brick to hold a door open, that is not its function. It is co-opted for that purpose by intelligent choice. It's actual function is still to construct walls. Co-opted functions are only functions in the context of the viewer.
Notice that the definition of "function" used by Charlie assumes that anything with function is designed. Hence his definition cannot be used to prove that anything is designed, because (according to Charlie) simply stating that an object has a function is synonymous with stating that it's designed. The definition is circular!

stevaroni · 23 February 2009

Your examples are co-opted functions. If I use a brick to hold a door open, that is not its function. It is co-opted for that purpose by intelligent choice.

What if a pile of bricks falls off a storm-tossed barge in the Chesapeake bay and is rapidly colonized by mussels. The colony flourishes because bricks are a much more stable substrate than the clamshell fragments they usually anchor on, and the colony flourishes to a degree that was previously unthought of in clam-ville. They're been co-opted for another function but no intelligence is required.

Charlie Wagner · 23 February 2009

"Notice that the definition of “function” used by Charlie assumes that anything with function is designed. Hence his definition cannot be used to prove that anything is designed, because (according to Charlie) simply stating that an object has a function is synonymous with stating that it’s designed.

The definition is circular!

True enough. Function implies purpose.

It is the integration of structure and process to create function that is the signature of intelligence.

Mike Elzinga · 23 February 2009

Our good buddy FL gave away the whole game when he admitted that human conception is a design actuation event.

— Frank J
:-) It almost looks like hidden language for “finally seducing someone on which one has had designs (lusted after)”. This might be related to part of the issues fundamentalists have with evolution. If evolution is true, there is no way these fundamentalists can hold themselves together.

Misha · 23 February 2009

Dan said: Notice that the definition of "function" used by Charlie assumes that anything with function is designed. Hence his definition cannot be used to prove that anything is designed, because (according to Charlie) simply stating that an object has a function is synonymous with stating that it's designed. The definition is circular!
Yes, I think it seems quite simple to most of us. Charlie has loaded his definition of "function." However, to him, it doesn't seem loaded because he does not believe that function can exist without design.
Charlie said: In fact, all complex, highly organized machines in which means are adapted to ends are the product of intelligent design.
Charlie doesn't seem to grasp the misunderstanding he has with adaptation. Adaptation is an unforseen result of the new "function" that the organism has gained. However, "function" is also an unforseen result of mutation. Organisms are not adapting "means" (mutations) to fit a function. The mutations occur on their own, with relative frequency. Sometimes these mutations perform a new function. The mutations have no goal to create a new function. Sometimes, it just works. If this new function is advantageous in getting the organism to reproductive age or in increasing the reproductive health of its offspring then the function will be carried on. Adaptation only comes into play once the function has been realized.

Charlie Wagner · 23 February 2009

"They’re been co-opted for another function but no intelligence is required."

WHAT !! Mussels have no intelligence?

Are we to deny the lowly mussel that proportional amount of intelligence to which it is entitled based on its rank in the hierarchy of life?

Misha · 23 February 2009

Charlie Wagner said: True enough. Function implies purpose. It is the integration of structure and process to create function that is the signature of intelligence.
But that is still not right. Function does not imply purpose. Function can be independent of purpose. Function can arise by chance from random mutations. The purpose of this function is hindsight. Charlie, can structure occur naturally without any designer? can a process occur naturally without any designer? Then why can't a function?

James F · 23 February 2009

Charlie, Unfortunately, you say that ID is a viable mechanism, but you don't present a single mechanism for ID. There is no proposed process that can be observed, tested, or otherwise analyzed. How are the superintelligent extraterrestrials (assuming that, as an agnostic, you don't invoke a supernatural cause) creating complex cellular structures here on Earth? Making philosophical or theological arguments is fine, but it's not science.
Charlie Wagner said:

but one thing I’d like to know is your definition of ID.

See my website for a complete explanation: http://www.charliewagner.com/casefor.htm

Robin · 23 February 2009

Charlie Wagner said: "Notice that the definition of “function” used by Charlie assumes that anything with function is designed. Hence his definition cannot be used to prove that anything is designed, because (according to Charlie) simply stating that an object has a function is synonymous with stating that it’s designed. The definition is circular! True enough. Function implies purpose. It is the integration of structure and process to create function that is the signature of intelligence.
Only when one can point to the intelligence and the intelligence readily admits the purpose, but you're forming what is known as Affirming the Consequence - a logical fallcy - which ironically is the product of circular reasoning. That noses are REQUIRED to hold up eye glasses today does not mean that noses have ever had such a purpose. The only reason they DO have such a purpose today is because we know the intelligence that created eye glasses. And clearly noses have no purpose for breathing since sharks have noses too. On the flip side, muddy flood zones have fossilized an unknown quanitity of biological organisms, but nobody in their right mind would suggest that such is the purpose of muddy flood zones, yet the fossil load from such is the product of "integration of structure and process to create function". So it appears that your conclusion regarding intelligent design does not validly follow from your premises.

stevaroni · 23 February 2009

Are we to deny the lowly mussel that proportional amount of intelligence to which it is entitled based on its rank in the hierarchy of life?

Um, yes. Larval mussels basically float through the water column until their "anchor end" contacts something it sticks to. I could be wrong, but I don't think they do much active "selecting" at all. Since most larval mussels will never brush across a suitable substrate the attrition rate is phenomenal. ( In fact, one of the few viable things to anchor on in the mud of the Chesapeake Bay is the shells of other mussels, which is why mussels are often found in vast shoals. It's also why it has proved so difficult to repopulate the bay, now that those shoals are fished out ).

Mike Elzinga · 23 February 2009

Flint said: ... What's important is that Paley didn't reason TO design, he reasoned FROM what he could not doubt. The task here isn't to derive a conclusion from the evidence, but to filter the evidence through the conclusion to ratify our preferences and needs. And since Charlie's assertions are defeated by even a hazy inkling of what feedback is, he must necessarily pretend it doesn't exist. It simply won't fit through the filter.
This captures it quite well. I looked at Charlie’s web site and read his stuff on evolution. He has bought into all the same pseudo-science promulgated by the ID/Creationists for decades; all the same misinformation and misconceptions. There is nothing new in his set of "arguments", and he appears never to have made an effort to really learn his science from reputable sources. Where he refers to reputable sources, he still uses the typical ID/Creationist misconceptions to explain the meaning of concepts (entropy, for example); obviously not having slogged through the explainations in the legitimate sources. The entire ID/Creationist hoax seems pretty straight-forward. Play word games and create a pseudo-science that “proves” evolution to be wrong (and therefore a given sectarian belief to be right), and pass it off as the real thing. Then prevent the rubes from ever comparing the pseudo-science with the real science by scaring the hell out of them with the threat that The Devil will go to great lengths to tempt and confuse them with lies and twisted words (oh the irony!). Keep the fear and paranoia levels high with vague inuendo about secular society and scientists, and use "the enemy" often in stern warnings. The shtick is still being played openly on the religion channels on TV; and apparently it still works. Charlie seems to have swallowed it hook, line, and sinker, but has convinced himself he believes it for rational reasons. Too bad; he seems like a nice, caring guy otherwise, and doesn't deserve to be duped like that.

Henry J · 23 February 2009

a planet where mechanical devices were observed to run wild through the woods, fighting and mating and producing other mechanical devices all on their own, a planet where you could put two grandfather clocks in a room alone and soon you’d come back to find them nursing a new brood of wristwatches, a planet where you couldn’t turn over a rock in your garden without disturbing a nest of larval machine screws,

Like in the novel Code of the Lifemaker by James P. Hogan?

stevaroni · 23 February 2009

The entire ID/Creationist hoax seems pretty straight-forward. Play word games and create a pseudo-science that “proves” evolution to be wrong (and therefore a given sectarian belief to be right), and pass it off as the real thing.

True dat. We need to always hammer on the question of "Have you / Can you actually measure any of this?" and "Do you have any evidence for any of this". The quest for truth gains nothing from getting wrapped up in semantic games. The basic issue is that the emperor has no clothes, not that there might be alternate philosophical ways to describe "cloth".

stevaroni · 23 February 2009

Like in the novel Code of the Lifemaker by James P. Hogan?

That's the point. While Paley sees a pocketwatch as irrefutable evidence of design, a sentient robot on Titan might trip over a pocketwatch on the beach and think nothing of it. The particular feature that catches Paley's eye as evidence of design is that he has prior knowledge that it is, in fact, artificial.

Torbjörn Larsson, OM · 23 February 2009

In the usual Charlie Wagner iteration, we have now progressed from claims that ID is true because evolution doesn't work (nevermind other possible alternatives), that evolution doesn't work even though it is a fact because it is a random process, that evolution is a random process because natural selection doesn't work, that natural selection doesn't work because it is not adaptation towards a contingent changeable environment but adaptation towards a predetermined target, and that this "ID-isn't evolution-isn't natural selection-is intelligent selection-is intelligently designed evolution" is entirely due to preloaded DNA.
Apparently 4 Gy of mutation can't possibly shred any of the necessary genes for all possible environments. (Or, possibly, Charlie Wagner's environments are a predetermined few as well.)

It is ironic that creationists discussing "organization", "order" and "complexity" can't define the terms, but may accept the biologically useful primary "function"; one would think that it would tell them something about their presuppositions and their viability vs the factual biological process.

It is also ironic that someone who believes a reducibly complex mouse trap is the one and only outcome starting from, say, a springy wire, completely ignoring countless other contingent outcomes of selection for immediate intermediary function (what about a coathanger; or a cork screw; or a door stopper; or ... ?), doesn't read the post which is describing how ancestral systems could be responsible for both secretory systems, piluses or flagella, by several actually realized pathways.

My prediction is that the Wagnerian Inquisition has nearly run its course. As long as creationists uses Morton's Demon to filter out the contrary evidence of entirely natural pathways by demonstrated mechanisms, here by the sleight of hand of reversing causality (the future goal determines the present process in full), we can only point to their fables as the unsuccessful obvious-for-all apologetics for beliefs they are.

neo-anti-luddite · 23 February 2009

Mike Elzinga said: I looked at Charlie’s web site and read his stuff on evolution. He has bought into all the same pseudo-science promulgated by the ID/Creationists for decades; all the same misinformation and misconceptions. There is nothing new in his set of "arguments", and he appears never to have made an effort to really learn his science from reputable sources. Where he refers to reputable sources, he still uses the typical ID/Creationist misconceptions to explain the meaning of concepts (entropy, for example); obviously not having slogged through the explainations in the legitimate sources. The entire ID/Creationist hoax seems pretty straight-forward. Play word games and create a pseudo-science that “proves” evolution to be wrong (and therefore a given sectarian belief to be right), and pass it off as the real thing. Then prevent the rubes from ever comparing the pseudo-science with the real science by scaring the hell out of them with the threat that The Devil will go to great lengths to tempt and confuse them with lies and twisted words (oh the irony!). Keep the fear and paranoia levels high with vague inuendo about secular society and scientists, and use "the enemy" often in stern warnings. The shtick is still being played openly on the religion channels on TV; and apparently it still works. Charlie seems to have swallowed it hook, line, and sinker, but has convinced himself he believes it for rational reasons. Too bad; he seems like a nice, caring guy otherwise, and doesn't deserve to be duped like that.
If this is the same Charlie Wagner (and I'm pretty sure it is), then IIRC he has claimed to have taught high-school science classes, which seems a bit off to me considering his breathtaking mangling of both science and the scientific method. When I got in to it with him about his whole "living things and machines both do stuff, so living things must be designed just like machines" crap, he couldn't figure out why the fact that living critters reproduce on their own and machines don't was such a huge problem for his little analogy. I'd say that if really is that willfully stupid, he surely does deserved to be duped like that. Of course, Charlie doesn't believe in devils; he's a space aliens guy....

Mike Elzinga · 23 February 2009

neo-anti-luddite said: If this is the same Charlie Wagner (and I'm pretty sure it is), then IIRC he has claimed to have taught high-school science classes, which seems a bit off to me considering his breathtaking mangling of both science and the scientific method. When I got in to it with him about his whole "living things and machines both do stuff, so living things must be designed just like machines" crap, he couldn't figure out why the fact that living critters reproduce on their own and machines don't was such a huge problem for his little analogy. I'd say that if really is that willfully stupid, he surely does deserved to be duped like that. Of course, Charlie doesn't believe in devils; he's a space aliens guy....
Wow! A high school science teacher. For shame! I guess I missed all the fun the last time he showed up around here. The space aliens thing is weird. The way he avoids learning real science strongly suggests a very significant psychological block; and that usually comes from terror of burning in hell or being ostracized by one’s religious cult when it involves evolution.

Charlie Wagner · 23 February 2009

"Wow! A high school science teacher. For shame!

I guess I missed all the fun the last time he showed up around here.

The space aliens thing is weird. The way he avoids learning real science strongly suggests a very significant psychological block; and that usually comes from terror of burning in hell or being ostracized by one’s religious cult when it involves evolution."

You're going to have to give me more to work with than that if you want me to reply with my legendary clever brilliance and witty persiflage. ;-)

I taught HS Chemistry and Physics for 33 years and the subject of evolution never came up once...never. So you can rest easily.

Mike Elzinga · 23 February 2009

Charlie Wagner said: You're going to have to give me more to work with than that if you want me to reply with my legendary clever brilliance and witty persiflage. ;-) I taught HS Chemistry and Physics for 33 years and the subject of evolution never came up once...never. So you can rest easily.
I’m always open to trying to understand how someone can constantly get well-established concepts wrong, especially someone who has the responsibility for clarifying ideas for students. I’ve spent many years dealing with conceptual issues in the teaching of math and physics, and I am also familiar with much of the research in this area by the Physic Education Research community. And I am surprised that evolution didn’t come up in your classes. Most high school physics courses at some point talk about modern physics and radioactivity, with radiocarbon dating as an illustrative example of an application. So perhaps you could enlighten us about how you can bollix up some of the fundamental concepts such as organization and entropy, to name a couple. As a physics teacher you should have made a better effort to get these concepts clear. They are quite fundamental.

stevaroni · 23 February 2009

I taught HS Chemistry and Physics for 33 years and the subject of evolution never came up once…never.

But seriously, Charlie, when you taught HS physics, didn't you do classroom experiments to demonstrate things like F=MA or take a stab at measuring the acceleration of falling objects? Wasn't at least one of the things you demonstrated was that, when in doubt, you could actually go our and measure things, and taking those measurements had a value in and of itself, because that's the way to figure stuff out? Aristotle sat down and did "thought experiments". Newton took detailed measurements. High schools teach Newtonian, not Aristotelian celestial mechanics. Didn't you never teach the history of celestial mechanics? When you did, didn't you emphasize the difference in the two methods? I certainly seem to recall that sort of stuff coming up in my science education, and I grew up in a backwater in the Pennsylvania Appalachians, not all that far from Dover.

mrg (iml8) · 23 February 2009

stevaroni said: I never understood why Paley was so influential anyhow.
He was saying something that seems, to many people, intuitively correct. The problem with intuition is that it's just a hunch and can easily go wrong if there's no effort made to see if the hunch is valid or not.
All the components were known to be man-made. If Paley had been strolling through a meadow on a planet where mechanical devices were observed to run wild through the woods, fighting and mating and producing other mechanical devices all on their own, a planet where you could put two grandfather clocks in a room alone and soon you'd come back to find them nursing a new brood of wristwatches, a planet where you couldn't turn over a rock in your garden without disturbing a nest of larval machine screws, his argument falls apart. Thing is, as far as all of biology goes, he is on such a planet.
This is part of the "wheels within wheels" nature of the Paley Fallacy. Here's another part of it, inspired by one of Mark Perakh's articles: take a bunch of pebbles, put them in a bowl, throw in a ping-pong ball. Ask anyone with two clues to rub together what item in the bowl is artificial: "Duh, the ping-pong ball." That's interesting because the ping-pong ball is, given an accuracy of measurement down to a few percent, a very simple object. It has a diameter and a shell thickness, which are uniform, and a uniform composition. The stones have dimensions that require a 3D model to represent accurately and highly varied composition. Ah, so we know the ping-pong ball is artificial because it's so simple. But then, what becomes the trademark of Design? Simplicity or complexity? Both? Well, I guess that covers all the bases. And then as the citation above shows is the whole dubious nature of reasoning that biosystems had to be designed because humans design machines. The serious problem is that the analogy between machines and biosystems is pretty weak. Machines don't reproduce or grow in any real way, while individual organisms of a species vary from one another in a wide-ranging way that the same model of a machine does not. What is particularly interesting about this variation is that organisms can not only tolerate but work perfectly well with a variation in tolerances of components that would be completely impossible in a machine. And that variation in tolerances has little or no trouble accommodating many new variations provided by benign or neutral mutations. Add to this the other interesting fact that biosystems have been around for a vastly longer time than machines, and the notion that biosystems are like machines seems less persuasive than thinking of machines as crude and juvenile attempts to impersonate biosystems. Again, I can't say Paley was necessarily wrong -- I can't rule out the possibility that biosystems were Designed. (Of course I similarly can't rule out that the entire Universe was created last Thursday and all our memories of the past were fabricated.) The problem with the Paley argument is that it simply makes an analogy with human machine-making and jumps to the conclusion of Design without addressing the alternatives. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Mike Elzinga · 23 February 2009

I taught HS Chemistry and Physics for 33 years…

— Charlie Wagner
Let’s start with a couple of your “arguments” right from your own website.

15. Darwinian evolution violates the 2d Law of Thermodynamics. This law states that entropy (disorder) increases in all natural processes. The evolution of life from simple to complex is a decrease in entropy.

As a physics teacher, did you not attempt to teach students to be aware of units? If you check the units of entropy, what do those units have to do with “disorder”? What are the units of disorder? Would this not have caused you to at least pause and realize that you should go check your understanding of entropy?

This is represented mathematically by S = k ln W where k is Boltzmann's constant and W is the probability of the occurrence of an event.

Where did you get the idea that W is the probability of the occurrence of an event? In the next few paragraphs of your arguments there are so many errors and misconceptions that the entire argument is complete gibberish. The point here, Charlie, is that you put a lot of time and effort into thinking about and making those arguments. But you never once, in all that time and effort, ever sat down with a legitimate set of science textbooks and worked out your understanding of the concepts you were tossing around so glibly. Yet you clearly tapped into pseudo-science sources and bad popularizations. So the question is, why, Charlie? As a person responsible for the proper education of students, why did you not keep yourself apprised of the issues of the common conceptual issues confronting students? This stuff has been covered repeatedly in meetings of the American Association of Physics Teachers for many, many years. The biology and chemistry teachers’ organizations also deal with these issues. Where were you in all this time, Charlie? The biologists here have already pointed out serious misconceptions you are also using in discussing biology concepts. I think what most people here would like to know is, what prevents you from checking your understanding of concepts before you put so much time and energy into construction bogus arguments with them? Somewhere there is a mental block that gets in your way. Unless this is all a spoof you are perpetrating.

Mike Elzinga · 23 February 2009

From my last post, Charlie:

Where did you get the idea that W is the probability of the occurrence of an event?

Just in case you didn’t get the significance of that question, ask yourself what ranges probabilities take on. If you then take the logarithm of a probability, what happens? Does this make sense? Do you see what is going on here?

mrg (iml8) · 24 February 2009

Mike Elzinga said: Unless this is all a spoof you are perpetrating.
Notice the interesting way that that Second Law of Thermodynamics (SLOT) argument is handled here? It is invoked to state that order cannot spontaneously arise from disorder: THERE IS NO SUCH THING AS A FREE LUNCH. Of course, the immediate answer is that the SLOT has this work "thermodynamics" in it -- which suggests that maybe it applies to thermodynamics but not necessarily to anything else. It can then be shown that outside of thermodynamics order arises from disorder all the time -- crystal growth, separation of mixtures, accumulation of ore deposits, and so on. The answer to this is: THAT IS NOT THE SAME KIND OF ORDER. THOSE ARE FREE SNACKS. BUT YOU CAN'T GET A FREE LUNCH. "Ah, so the SLOT ... somehow ... says that order will never arise from disorder, but only in FREE SNACK cases and never in FREE LUNCH cases. I see." And what's the difference in these case? Informally speaking, few would deny that biostructures are as a rule more elaborate than the structures of inanimate objects. But few would also deny that biochemistry is more elaborate than inorganic chemistry (we'll leave organic chemistry as kind of a border region here). However, the two are not operating by different rules of chemistry. Similarly the elaboration of inanimate and animate objects doesn't necessarily imply any different application of the rules of fundamental physics. So to get around this uncomfortable fact the difference between them is defined as the exhibition of a "purposeful relationship of functional subsystems" by biosystems that all but declares them as Designed ... ... while simply declaring impossible the option that these biosystems might have arisen through an unplanned process of gradual selection by environmental pressures. Alas all evidence and theory strongly suggests that it is perfectly plausible ... while the Design option remains in the domain of "somebody somewhere sometime did something." Cheers -- MrG / http://www.vectorsite.net/gblog.html

mrg (iml8) · 24 February 2009

mrg (iml8) said: "Ah, so the SLOT ... somehow ... says that order will never arise from disorder, but only in FREE SNACK cases and never in FREE LUNCH cases. I see."
Make that "only in FREE LUNCH cases but not FREE SNACK cases". Hit the SUBMIT button instead of PREVIEW ...

Mike Elzinga · 24 February 2009

mrg (iml8) said: ... The answer to this is: THAT IS NOT THE SAME KIND OF ORDER. THOSE ARE FREE SNACKS. BUT YOU CAN'T GET A FREE LUNCH. ...
One of the major bugbears for the pseudo-scientist is inconsistency. Eventually a pseudo-scientific law runs into a problem in that it glaringly conflicts with some reality. The typical response of the pseudo-scientist is to make up more words, rules and laws to patch this up. Eventually he (it’s usually a he) is juggling a huge Rube-Goldberg mess and has to develop a rapid, cocky patter to quickly gloss over the problems as they are pointed out. That is one of the main differences between honest scientific investigation and pseudo-science. In real science, inconsistencies nudge scientists toward deeper levels of analysis and eventually to deeper understanding. Pseudo-scientists are thinking only of their egos and who they might lose control of. It might be interesting to see what Charlie’s excuses are, but somehow I suspect we won’t get honest answers and the kind of introspection required in this case.

Charlie Wagner · 24 February 2009

"Where did you get the idea that W is the probability of the occurrence of an event?"

From Richard Feynman "Lectures on Physics" - "Order and entropy" (vol I section 46-5) as follows:

"So we now have to talk about what we mean by disorder and what we mean by order. ... Suppose we divide the space into little volume elements. If we have black and white molecules, how many ways could we distribute them among the volume elements so that white is on one side and black is on the other? On the other hand, how many ways could we distribute them with no restriction on which goes where? Clearly, there are many more ways to arrange them in the latter case. We measure "disorder" by the number of ways that the insides can be arranged, so that from the outside it looks the same. The logarithm of that number of ways is the entropy. The number of ways in the separated case is less, so the entropy is less, or the "disorder" is less."

A state of high order has a low probability and a state of low order has a high probability. Feynman attaches NO UNITS to this type of entropy. The units are the result of introducing Boltzmann's constant, the constant of proportionality which serves to make the statistical mechanical entropy equal to the classical thermodynamic entropy of Clausius.

Claude Shannon, in his 1948 paper "A Mathematical Theory of Communication" attaches no units to entropy and never mentions Boltzmann's constant.

Some people say that the energy from the Sun allows life to evolve, but undirected thermal energy is only able to do the chemical and thermal entropy work in polypetide synthesis, but not the coding (or sequencing) portion of the configurational entropy work.... It is difficult to imagine how one could ever couple random thermal energy flow through the system to do the required configurational entropy work of selecting and sequencing.

Charlie Wagner · 24 February 2009

"the entire argument is complete gibberish."

I'm sorry that you didn't understand my argument. I guarantee that it is perfectly valid.

Statistical (logical) entropy is a problem for a lot of people schooled in classical thermodynamics

neo-anti-luddite · 24 February 2009

Okay, Charlie, so tell us: how many ways can you arrange the "insides" of a living thing (or the system that produces them, or whatever it is that you think you're subjecting to measurement) so that "from the outside, it looks the same"?

Run the numbers, man!

Dazzle us with your incandescent stupidity!

Mike Elzinga · 24 February 2009

Charlie Wagner said: "the entire argument is complete gibberish." I'm sorry that you didn't understand my argument. I guarantee that it is perfectly valid. Statistical (logical) entropy is a problem for a lot of people schooled in classical thermodynamics
I am extremely familiar with Feynman, and it is clear you haven’t placed his discussion about order in context. If you had been in contact with the issues in teaching physics during the 33 years you were teaching, you would have known about the problems many textbook authors created when they took a side trip to talk about statistical counting techniques before they came back to the accountancy of energy. The discussions about order often use the spatial arrangements of matter to show how to deal with permutations and combinations. But I asked you some very direct questions that you should have asked yourself long ago. What do the units of entropy have to do with order? What is the logarithm of a probability? Do your answers to these questions cause you to question your understanding, or are you going to continue to blame Feynman?

Charlie Wagner · 24 February 2009

"What do the units of entropy have to do with order?

What is the logarithm of a probability?

Do your answers to these questions cause you to question your understanding, or are you going to continue to blame Feynman?

Entropy is the measure of the disorder of a system. It is the natural logarithm of the number of ways you can distribute elements within a volume space so that from the outside it looks the same.

Did you not read what I wrote above?

I am not blaming Feynman because he is absolutely correct.

Neither he or I are responsible for anyone's failure to comprehend it.

"In my opinion, the audacious attempt to reveal the formal equivalence of the ideas of biological organization and thermodynamic order ...must be judged to have failed." — Peter Medawar

Mike Elzinga · 24 February 2009

Charlie Wagner said: "What do the units of entropy have to do with order? What is the logarithm of a probability? Do your answers to these questions cause you to question your understanding, or are you going to continue to blame Feynman? Entropy is the measure of the disorder of a system. It is the natural logarithm of the number of ways you can distribute elements within a volume space so that from the outside it looks the same. Did you not read what I wrote above? I am not blaming Feynman because he is absolutely correct. Neither he or I are responsible for anyone's failure to comprehend it. be judged to have failed." — Peter Medawar
I have the Feynman Lectures on Physics right here on my desk in front of me. I have read through them many times over the years. You still haven’t grasped the issue. You seem to be consciously avoiding the two questions I asked. I took what you wrote right from your own website. The stuff betrays some extremely serious misconceptions, and I asked you two questions that you should answer. The fact that you continue to engage in exegesis, hermeneutics, and citing authors does not hide the fact that you don’t comprehend the concepts. Your arguments are a shoddy patchwork of misconceptions that explain nothing. I am trying to keep the process simple (as you should have done when leading students through inconsistencies in their understandings of fundamental concepts). Start by answering those two questions. What are the units of entropy and order (and you applied entropy to spatial order, which means you don’t get it yet)? What happens if you take the logarithm of a probability? Does the result make sense?

gregwrld · 24 February 2009

Hey Charlie, is the 2nd Law time-dependent? If not, why not?...g

stevaroni · 24 February 2009

Claude Shannon, in his 1948 paper “A Mathematical Theory of Communication” attaches no units to entropy and never mentions Boltzmann’s constant.

Claude Shannon, in his 1948 paper “A Mathematical Theory of Communication” is specifically discussing "information entropy" a concept that he coins himself. "Information entropy" is his description of the compressibility of information sent through a communication medium, as viewed from the ability of the recipient to recover it accurately and "read" it again. A long string of simple data, like a fax, has low "information entropy", it can be readily compressed, and unambiguously recovered. A photograph containing many different textures has high "information entropy", it is difficult to compress in a way such that all the original information is readily recoverable. There is simply no "information" analog to the thermodynamic arguments in the 2nd law. Information entropy has nothing to do with the 2nd Law of Thermodynamics ( OK, aside from the fact that real communication channels always have finite noise floors due to the fact that they rely on physical data links, and those data links are never perfect ).

mrg · 24 February 2009

Mike Elzinga said: One of the major bugbears for the pseudo-scientist is inconsistency. Eventually a pseudo-scientific law runs into a problem in that it glaringly conflicts with some reality.
I like to think of their notions as "SAS (Short Attention Span)" arguments. The idea is to come up with something that sounds glibly persuasive -- and then, when it gets caught short by the facts, come up with some other argument that also sounds glibly persuasive, hang whether it contradicts the first argument or not. When that argument gets caught short in turn, one can either switch to a third glib argument -- or switch back to the first one, does it matter? If the audience has a short attention span, no. The goal is only to Never Get Cornered In The Argument. This is why Darwin-bashers do so well in debates. As far as persuading anyone with a long attention span that the argument contains two clues to rub together, it's useless, which is why Darwin-bashers do so badly in court. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Mike Elzinga · 24 February 2009

I am not blaming Feynman because he is absolutely correct. Neither he or I are responsible for anyone’s failure to comprehend it.

— Charlie Wagner
Let me give you a hint, Charlie. Thermodynamics and statistical mechanics are about accounting for energy. Feynman’s style of explanation was to frequently use analogies. Other authors have done the same. In this case, Feynman is discussing a room that looks the same from the outside, but has multiple possible arrangements of stuff on the inside. That is a metaphor for a thermodynamic system whose macroscopic properties (total energy, pressure, temperature, magnetic properties, etc.) look constant to the outside observer. But there is lots activity going on inside; atoms oscillating or banging into each other, and so on. Each of these motions or activities involves a certain amount energy at the microscopic level. The analogy Feynman (as have many other authors) uses is for the purpose of showing how to count the many ways that energy (not things) can be distributed among all those microscopic mechanisms. They are called “available energy states.” What that means technically is that these are states that are consistent with the macroscopic state of the thermodynamic system. There may be many ways that the energy can be distributed among the microscopic systems in a way that will still produce the same macroscopic state. The statistical counting techniques that the authors are illustrating are designed to show that there are combinations of these states that are more numerous than others. If these microscopic states are not isolated from each other, then the energy will be found to be distributed among the most numerous sets of states that are still consistent with the macroscopic state of the system. That’s it; it has nothing to do with the spatial arrangements of matter. It has nothing to do with the universe coming all apart. Now go back to the questions. What are the units of entropy? What are the units of “order”. What happens if you take the logarithm of a probability?

neo-anti-luddite · 24 February 2009

Mike Elzinga said: You still haven’t grasped the issue. You seem to be consciously avoiding the two questions I asked.
While Charlie may not have much of a grasp on logic or science, he's a master at consciously avoiding inconvenient rebuttals to his arguments. He usually avoids them by assuming that the person offering the rebuttal "doesn't get it" (with the implication often being that the person's understanding is rooted in outdated knowledge). If you're looking for the "mental block" Charlie's got going, my guess is that it's ego pure and simple: he just can't bear the thought that he really might be that dumb.

John Kwok · 24 February 2009

Charlie, my kind remarks towards you seem to have been misplaced. Answer Mike's questions. If you can't then maybe you're just another delusional IDiot dropping by here at PT:
Charlie Wagner said: "What do the units of entropy have to do with order? What is the logarithm of a probability? Do your answers to these questions cause you to question your understanding, or are you going to continue to blame Feynman? Entropy is the measure of the disorder of a system. It is the natural logarithm of the number of ways you can distribute elements within a volume space so that from the outside it looks the same. Did you not read what I wrote above? I am not blaming Feynman because he is absolutely correct. Neither he or I are responsible for anyone's failure to comprehend it. "In my opinion, the audacious attempt to reveal the formal equivalence of the ideas of biological organization and thermodynamic order ...must be judged to have failed." — Peter Medawar

Mike Elzinga · 24 February 2009

neo-anti-luddite said:
Mike Elzinga said: You still haven’t grasped the issue. You seem to be consciously avoiding the two questions I asked.
While Charlie may not have much of a grasp on logic or science, he's a master at consciously avoiding inconvenient rebuttals to his arguments. He usually avoids them by assuming that the person offering the rebuttal "doesn't get it" (with the implication often being that the person's understanding is rooted in outdated knowledge). If you're looking for the "mental block" Charlie's got going, my guess is that it's ego pure and simple: he just can't bear the thought that he really might be that dumb.
Yeah, you may be right, but somehow I hope not. We’re probably being a bit rough on Charlie, but I sense from his website that he could come around. He was once a person who decided to become a science teacher. I don’t know the reasons he decided this, but I’m hoping it was a person who was fascinated with nature and wanted to keep learning. If such a person was in there, I’m hoping he still there and will come out. I guess we’ll see.

Charlie Wagner · 24 February 2009

"That is a metaphor for a thermodynamic system whose macroscopic properties (total energy, pressure, temperature, magnetic properties, etc.) look constant to the outside observer. But there is lots activity going on inside; atoms oscillating or banging into each other, and so on. Each of these motions or activities involves a certain amount energy at the microscopic level."

The phase space, which includes both the microstates AND the macrostates that the statistical mechanical entropy model describes are NOT classical constructs. The entropies are array entropies, that are based on organization.
They are similar to the "sorting" described by Feynman above, more like the arrangement of molecules in an ideal gas than the thermal entropies that deal with energy, such as described by Clausius.
Only Boltzmann's constant, a human (and artificial!) construct connects statistical mechanical entropy to energy.

Dan Styer · 24 February 2009

Charlie Wagner said: "Where did you get the idea that W is the probability of the occurrence of an event?" From Richard Feynman "Lectures on Physics" - "Order and entropy" (vol I section 46-5) as follows: "So we now have to talk about what we mean by disorder and what we mean by order. ... Suppose we divide the space into little volume elements. If we have black and white molecules, how many ways could we distribute them among the volume elements so that white is on one side and black is on the other? On the other hand, how many ways could we distribute them with no restriction on which goes where? Clearly, there are many more ways to arrange them in the latter case. We measure "disorder" by the number of ways that the insides can be arranged, so that from the outside it looks the same. The logarithm of that number of ways is the entropy. The number of ways in the separated case is less, so the entropy is less, or the "disorder" is less."
As Feynman says, W is "the number of ways that the insides can be arranged, so that from the outside it looks the same." I like to use the phrase "W is the number of microstates consistent with the specified macrostate". Then the entropy of the macrostate (of the set of states that "look the same from the outside") is S = k_B ln W. [As a sidenote, let me point out that this applies only for the microcanonical ensemble.] Charlie, in contrast, thinks that W represents "the probability of the occurrence of an event." Putting aside the vagueness (Charlie apparently means microstate when he says "occurrence" and macrostate when he says "event"), Mike's point is that Charlie gets the sign wrong: macrostates with low entropy have high probability, whereas Charlie's mistake would give them low probability. It's worthy of note that Feynman never thought that the second law of thermodynamics prohibits evolution http://geneticargonaut.blogspot.com/2009/01/richard-feynmans-affair-with-simulated.html
Charlie Wagner goes on to say: Some people say that the energy from the Sun allows life to evolve, but undirected thermal energy is only able to do the chemical and thermal entropy work in polypetide synthesis, but not the coding (or sequencing) portion of the configurational entropy work.... It is difficult to imagine how one could ever couple random thermal energy flow through the system to do the required configurational entropy work of selecting and sequencing.
Actually, what "some people" say is that the entropy decrease in the sun permits life on earth to evolve. Feynman is one of those people. (Just as an aside, let me mention that I asked Murry Gell-Mann about this question and he answered it incorrectly. But Gell-Mann never did spend much time thinking about thermodynamics. I was never able to quiz Feynman on this topic because he died before I had a chance to.) Charlie, however, goes on to talk about "undirected energy" (What's that supposed to mean? Energy is a scalar so it's always undirected!) Then he simply states by fiat that the supply of energy from the sun (he means entropy throughput due to the sun) can be responsible for polypeptide synthesis but it can't be responsible for selecting and sequencing. This is one of the most amazing claims I've ever encountered! He admits that the entropy can decrease, but claims that it can decrease through one mechanism but not through another!

fnxtr · 24 February 2009

I'll have Thousand Island dressing on mine. No, wait, make that ranch.

mrg · 24 February 2009

Dan Styer said: He admits that the entropy can decrease, but claims that it can decrease through one mechanism but not through another!
THERE IS NO SUCH THING AS A FREE LUNCH! But free snacks are OK. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Dan Styer · 24 February 2009

Charlie Wagner said: The phase space, which includes both the microstates AND the macrostates that the statistical mechanical entropy model describes are NOT classical constructs.
Okay so far: A microstate corresponds to a point in phase space while a macrostate corresponds to a region in phase space ... in the microcanonical ensemble, the region with a particular energy. The volume of that region is proportional to W, and the log of W is proportional to entropy.
Charlie Wagner said: The entropies are array entropies, that are based on organization.
Well, I don't know what you mean by "array entropy", and given that you have your own private (and circular) definition for "organization", whatever your "array entropy" is it can't be connected with the public and well-defined concept of entropy.
Charlie Wagner said: They are similar to the "sorting" described by Feynman above, more like the arrangement of molecules in an ideal gas than the thermal entropies that deal with energy, such as described by Clausius.
The ideal gas is not relevant to this discussion, or to Feynman's discussion. The ideal gas cannot liquefy or crystallize, you can't construct any living thing out of ideal gas.
Charlie Wagner said: Only Boltzmann's constant, a human (and artificial!) construct connects statistical mechanical entropy to energy.
It is true that Boltzmann's constant is a human and artificial construct. It is false that this is the only connection between entropy and energy ... as stated above, entropy is related to the volume of phase space of a given energy.

stevaroni · 24 February 2009

The 2nd law arguments are logical pap anyway.

Charlie organizes things all day, decreasing their entropy. Every time he writes in his blog, he (at least in theory) increases it's information, thus decreasing entropy.

We all agree that the 2nd law is not immutable, entropy can be decreased, at least locally, right Charlie?

The question is, under what conditions? What is required to decrease entropy?

Charlie would argue that intelligence is required, but this is manifestly not the case. Bower birds decrease the entropy around their nests by organizing bright shiny objects.

Still too "intelligent"? then how about a beetle walking across sand, leaving a pattern of tracks, thereby decreasing the entropy of the otherwise undisturbed surface.

Still too "intelligent"? Then how about the dandelion seeds and fungal "fairie rings" that dramatically and frustratingly decrease the entropy of my nice, even green lawn?.

No, the common denominator seems to be that life itself seems to have, as an innate ability, the power to locally decrease entropy.

So since only living things evolve, it doesn't make a rat's ass difference if entropy decreases in evolution, since living things have the ability to decrease entropy all the time.

QED.

And since the 2nd law does not apply to living things, we can stop using it as an excuse now.

(Yes, I know, I know.

But sometimes you have to think like a creationist to understand just how dumb their arguments are.

Ouch. Now my head hurts.)

Charlie Wagner · 24 February 2009

"We’re probably being a bit rough on Charlie, but I sense from his website that he could come around. He was once a person who decided to become a science teacher. I don’t know the reasons he decided this, but I’m hoping it was a person who was fascinated with nature and wanted to keep learning. If such a person was in there, I’m hoping he still there and will come out."

I'm starting to feel like Beatrix Kiddo (Uma Thurman) in the scene in "Kill Bill" where she confronts O-Ren Ishii (Lucy Liu) and the rest of the "Crazy 88's"

Outnumbered?...Not.

I loved science and wanted to do research. But Mammon intervened when my second child was born. I became a teacher because I needed the income, but it turns out I was pretty good at it...damned good IMHO!
http://www.charliewagner.net/teach.htm

stevaroni · 24 February 2009

I’m starting to feel like Beatrix Kiddo (Uma Thurman) in the scene in “Kill Bill” where she confronts O-Ren Ishii (Lucy Liu) and the rest of the “Crazy 88’s”

Charlie, I gotta love your chutzpa, but it's actually more like the Black Knight in Monty Python and the Holy Grail. "Tis but a scratch!"

neo-anit-luddite · 24 February 2009

Charlie Wagner said: I'm starting to feel like Beatrix Kiddo (Uma Thurman) in the scene in "Kill Bill" where she confronts O-Ren Ishii (Lucy Liu) and the rest of the "Crazy 88's" Outnumbered?...Not.
So Mike, do you think we can call this confirmation of the "ego" theory of Charlie's calculated ignorance? I love it when people prove me right so damn quickly.

Henry J · 24 February 2009

THERE IS NO SUCH THING AS A FREE LUNCH! But free snacks are OK.

In that case I'll have the onion rings.

eric · 24 February 2009

mrg (iml8) said: And what's the difference in these case[s]? Informally speaking, few would deny that biostructures are as a rule more elaborate than the structures of inanimate objects. But few would also deny that biochemistry is more elaborate than inorganic chemistry (we'll leave organic chemistry as kind of a border region here). However, the two are not operating by different rules of chemistry.
I think that's the key point that Charlie has yet to answer. Focusing on thermodynamic details allows him to ignore this point: many natural systems of molecules spontaneously organize. So why not C,T,G, and A units? What is unique and different about them? (...and yeah Mike, I know thermodynamic entropy is not about objects, but if he's going to apply it to objects, he has to explain why his law allows some molecules to spontaneously organize but not others). Another key error is that the same genomic sequence can be junk in one place and extremely critical in another. This fact renders his argument completely invalid. To see that, you have to do a thought experiment. Consider two hypothetical places in the genome. In one place, the (I know its fakie) sequence GATTAGA (heh) will result in phenotypic complexity, but any single letter substitution leads to it being junk: nothing is built. In the second place, the sequence GATTACA is critical in the same way. Now ask: is the change from C to G allowed by the creationist version of 2LOT? Is it forbidden? Is G to C allowed or forbidden? The IDist has to answer this way: in the first sequence 2LOT forbids a C to G mutation because that would create order, but allows G to C. In the other case 2LOT allows a C to G mutation but forbids G to C. The ID version of 2LOT requires that the law "know" what phenotype will result! Which is utter and complete baloney. Its patently ridiculous. Physical laws have - and can have - NO foreknowledge of what phenotype will be built from a mutational change in the genotype. In short, IDers have to believe in a physical law that knows before a mutation occurs whether it will lead to phenotypic junk or phenotypic structure because the exact same mutation can lead to junk or structure in different circumstances.

Charlie Wagner · 24 February 2009

"No, the common denominator seems to be that life itself seems to have, as an innate ability, the power to locally decrease entropy."

You're partly right.
But only photosynthesis, chemosynthesis and intelligence has the ability to decrease entropy. on earth.

Mike Elzinga · 24 February 2009

Well, I don’t know what you mean by “array entropy”, and given that you have your own private (and circular) definition for “organization”, whatever your “array entropy” is it can’t be connected with the public and well-defined concept of entropy.

— Dan Styer
This is precisely what I feared might happen, although I was hoping not. It’s the most common shtick in the ID/Creationist’s bag of debating tricks. If someone in the science community works hard to simplify concepts for the layperson while trying not to mislead, the ID/Creationist immediately “ups the ante” by throwing in more technical jargon. It can be misuses of legitimate scientific concepts, or as illustrated here, made-up crap. This gives the appearance to the ID/Creationist’s audience that he is “in the game” and can argue with the best. I think Charlie has just demonstrated he is just here to stroke his own ego and harass. As a science teacher, if he was ever alive, he died long ago.

Ouch. Now my head hurts.

— stevaroni
Yup, I guess that was Charlie’s intent.

Charlie Wagner · 24 February 2009

"So Mike, do you think we can call this confirmation of the “ego” theory of Charlie’s calculated ignorance?"

Ego has a lot to do with it...and a somewhat child-like need for attention.

Mike Elzinga · 24 February 2009

neo-anit-luddite said:
Charlie Wagner said: I'm starting to feel like Beatrix Kiddo (Uma Thurman) in the scene in "Kill Bill" where she confronts O-Ren Ishii (Lucy Liu) and the rest of the "Crazy 88's" Outnumbered?...Not.
So Mike, do you think we can call this confirmation of the "ego" theory of Charlie's calculated ignorance? I love it when people prove me right so damn quickly.
Right on! I was wrong.

mrg · 24 February 2009

Henry J said: In that case I'll have the onion rings.
They're tasty but rough on the digestion. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Mike Elzinga · 24 February 2009

Charlie Wagner said: "So Mike, do you think we can call this confirmation of the “ego” theory of Charlie’s calculated ignorance?" Ego has a lot to do with it...and a somewhat child-like need for attention.
Yeah, but Heath Ledger got the Emmy; you didn’t.

Mike Elzinga · 24 February 2009

Mike Elzinga said:
Charlie Wagner said: "So Mike, do you think we can call this confirmation of the “ego” theory of Charlie’s calculated ignorance?" Ego has a lot to do with it...and a somewhat child-like need for attention.
Yeah, but Heath Ledger got the Emmy; you didn’t.
Actually, I think that was an Oscar. Sorry, Charlie.

mrg · 24 February 2009

eric said: Physical laws have - and can have - NO foreknowledge of what phenotype will be built from a mutational change in the genotype.
I like that. It's a simple fact of lab observation that mutations can add or subtract from a genome sequence, or modify an existing sequence. Kinda covers all the bases, right? Anything else that can happen? And what distinguishes "good" from "bad"? Nothing but the attentiveness of the Grim Reaper that lets the "good" predominate at the expense of the "bad". There's no way to just look at the sequence and say "good" or "bad". Of course the Darwin-basher argument is that the odds are that the changes will be overwhelmingly "bad" -- that "law of genetic entropy" that keeps getting floated around along with the "law of conservation of information". However, geneticists have been analyzing the "odds" at least back to Ronald Fisher and they understand the odds pretty well. Interestingly the gibe that "natural selection can only modify existing information" is true to an extent: evolutionary adaptations are modifications of existing structures. That's why bats and birds have wings built around modified hands. That gradual adaptation is what it's all about, and it can do a lot -- what good is half an eye? It's 1% better than 49% of an eye. This is exactly what would be expected under Darwinian evolution and exactly what is observed. Cheers -- MrG / http://www.vectorsite.net/gblog.html

Rocket Mike · 24 February 2009

Hey scientists! Haven't you given Charlie Wagner too much time on his soapbox with his micro-cephalic arguments. He sounds good at first, but soon the blather comes out. Check him at RationalWiki.

Mike Elzinga · 24 February 2009

Rocket Mike said: Hey scientists! Haven't you given Charlie Wagner too much time on his soapbox with his micro-cephalic arguments. He sounds good at first, but soon the blather comes out. Check him at RationalWiki.
Kinda like a dose of epikek, isn't he.

Stanton · 24 February 2009

Mr Wagner, would it be possible if I could ask if you can demonstrate to me, if not the others, how to detect and understand "design" in nature?

Scientists and the scientific-minded are rightfully extremely skeptical about the claims of Intelligent Design proponents as, given a thorough examination of biological phenomena, given the whimsical, nonsensical, or downright odd, awkward, and inefficient natures of these aforementioned phenomena, whoever or whatever is/are the designer has a weird sense of humor and or does not follow logic as humans can recognize it.

What I'm trying to say is, how does one go about recognizing "Intelligent Design" in nature?

How does one conclude that an Intelligent Designer designed organisms as weird as the Vetulicolia of the early to middle Cambrian? How does one realize that it was the doings of an Intelligent Designer that all of the Sarraceniaceae pitcher plants, only the Tate's marsh pitcher, Heliamphora tatei, has genes for proteolytic enzymes?

What sort of intelligence was behind the reasoning for modifying a panda's carpal bone to serve as a makeshift thumb, rather than modifying the fifth digit? What sort of intelligence lead horses to have no ability to taste sour foods?

It's been my unfortunate experience, Mr. Wagner, that Intelligent Design proponents have had no interest in answering these sorts of questions, and that disinterest is, in my opinion, probably the greatest fatal flaw in attempting to present Intelligent Design as a science.

Charlie Wagner · 24 February 2009

"Mr Wagner, would it be possible if I could ask if you can demonstrate to me, if not the others, how to detect and understand “design” in nature?"

I would be happy to answer your questions.

First of all, I do not argue for "design". It's a loaded word with too much baggage. And it begs the question: "who is the designer.

You can detect intelligence in nature by the presence of organization.

Living systems are made up of structures and processes integrated in such a way that they not only support each other, but they contribute to the overall function of the living system.

This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There's simply no way to get around that basic point.

You ask questions that have no answers. I recognize that intelligent input is a requirement but I don't have a clue where this intelligence comes from.

I believe that life came to earth from elsewhere with its capacity to create diversity already present.

The Darwinian paradigm holds that copying mistakes and the shuffling of existing genes are sufficient to write the new genes needed for evolutionary advances. Cosmic Ancestry holds that these processes cannot write useful new genes. Instead, for a species to make evolutionary progress, new genes must first be installed into its genome from outside.

stevaroni · 24 February 2009

Charlie writes... You’re partly right. But only photosynthesis, chemosynthesis and intelligence has the ability to decrease entropy. on earth.

Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention. Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest.

Charlie Wagner · 24 February 2009

"Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention."

No supernatural intervention but these processes are NOT unguided...Remember DNA?

"Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest."

I said "on earth", not "in living organisms".

stevaroni · 24 February 2009

No supernatural intervention but these processes are NOT unguided…Remember DNA?

You do realize that photosynthesis, or at least the reactions therein, ( CO2 + 2 H2A + photons → (CH2O)n + H2O + 2A or carbon dioxide + electron donor + light energy → carbohydrate + oxygen + oxidized electron donor ) don't actually require plants and plant DNA. It just requires a catalyst, in this case, one of a number of possible chlorins, of which there are many. Our buddy green plant chlorophyll is the most favorite example in the earths biosphere, but there are quite a few simpler flavors that will do the job, albeit with less efficiency. Many bacteria use these various simpler types, and there's no reason to believe that living things are required in order to produce simple chlorophylls, there's some reason to believe it exists in the chemical soup on Titan, for example. Chemosynthesis is even simpler, it's just an oxidation reaction with a catalyst ( CO2 + O2 + 4{H2S} → CH2O + 4{S} + 3{H2O} ). It's all simple chemistry, you could have demonstrated it in your high school chemistry lab. No DNA is required. You're falling into the whole "mousetrap" fallacy again. Just because it's a complicated thing now doesn't mean that there were no simpler precursors. Even if you take chlorophyll still, there are plenty of

Stanton · 24 February 2009

Charlie Wagner said: I would be happy to answer your questions. First of all, I do not argue for "design". It's a loaded word with too much baggage. And it begs the question: "who is the designer. You can detect intelligence in nature by the presence of organization. Living systems are made up of structures and processes integrated in such a way that they not only support each other, but they contribute to the overall function of the living system. This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There's simply no way to get around that basic point.
This doesn't answer the questions posed about the intelligence behind the examples I pointed out.
You ask questions that have no answers. I recognize that intelligent input is a requirement but I don't have a clue where this intelligence comes from.
What good is recognizing "intelligent input" if you don't know where and or what its origins are?
I believe that life came to earth from elsewhere with its capacity to create diversity already present.
Where is the proof that lead you to this conclusion?
The Darwinian paradigm holds that copying mistakes and the shuffling of existing genes are sufficient to write the new genes needed for evolutionary advances. Cosmic Ancestry holds that these processes cannot write useful new genes. Instead, for a species to make evolutionary progress, new genes must first be installed into its genome from outside.
Wrong: Darwin was not aware of genes or genomes, or mistakes in copying the aforementioned. Furthermore, please demonstrate how Cosmic Ancestry explains the "installation" of well-documented mutations such as antibiotic-resistance genes in various pathogenic bacteria, the variability of capsid proteins in the HIVirus, lactase inhibitor-inhibition in humans, production of chitinase in humans, or the antifreeze glycoprotein in Antarctic icefish better than random mutation in conjunction with natural selection. Or, perhaps you can demonstrate the intelligence in things like the gigantic Mamavirus and Mimivirus having their own parasitic satellite virus, "Sputnik"?

Mike Elzinga · 24 February 2009

Charlie Wagner said: "Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention." No supernatural intervention but these processes are NOT unguided...Remember DNA? "Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest." I said "on earth", not "in living organisms".
You need to get in contact with Philip Bruce Heywood. His theory of "superconduction" plus the Earth, Moon, Sun gravitational system imparting information to electrons is far more advanced than your theory. You've been out done by an Australian living in the Outback.

neo-anti-luddite · 24 February 2009

Mike Elzinga said:
Charlie Wagner said: "Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention." No supernatural intervention but these processes are NOT unguided...Remember DNA? "Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest." I said "on earth", not "in living organisms".
You need to get in contact with Philip Bruce Heywood. His theory of "superconduction" plus the Earth, Moon, Sun gravitational system imparting information to electrons is far more advanced than your theory. You've been out done by an Australian living in the Outback.
That's Charlie, all right. He never fails to fail to impress....

Mike Elzinga · 24 February 2009

Charlie Wagner said: I would be happy to answer your questions. First of all, I do not argue for "design". It's a loaded word with too much baggage. And it begs the question: "who is the designer. You can detect intelligence in nature by the presence of organization. Living systems are made up of structures and processes integrated in such a way that they not only support each other, but they contribute to the overall function of the living system. This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There's simply no way to get around that basic point. You ask questions that have no answers. I recognize that intelligent input is a requirement but I don't have a clue where this intelligence comes from. I believe that life came to earth from elsewhere with its capacity to create diversity already present. The Darwinian paradigm holds that copying mistakes and the shuffling of existing genes are sufficient to write the new genes needed for evolutionary advances. Cosmic Ancestry holds that these processes cannot write useful new genes. Instead, for a species to make evolutionary progress, new genes must first be installed into its genome from outside.
Charlie. Just in case you didn’t get the significance of Philip Bruce Heywood, here is a link to his First Book of Quantum Computation. As you can see, just this first chapter alone puts your Cosmic Ancestry to shame. And there is much more on his web site. According to Heywood, who is the foremost expert in the world on this, your theory neglects magnetism and superconduction along with the Earth, Sun, Moon gravitational system. He can also explain how this overcomes entropy barriers, of which you are apparently not even aware. You only suggested the Sun with some indirect allusion to the Earth. Therefore there is no way your theory of Cosmic Ancestry can explain organization because there is no way for information to get into electrons to impart organization to anything. Without information getting into electrons, it can’t get into DNA. If it can’t get into DNA, living things cannot become organized. So your theory of Cosmic Ancestry is obviously wrong.

DS · 24 February 2009

Charlie wrote:

"The Darwinian paradigm holds that copying mistakes and the shuffling of existing genes are sufficient to write the new genes needed for evolutionary advances. Cosmic Ancestry holds that these processes cannot write useful new genes. Instead, for a species to make evolutionary progress, new genes must first be installed into its genome from outside."

Wrong again oh sultan of nonsense. We bloody well know where new genes come from and it ain't from "outside". So, do you really believe that every mutation is put into every organism by some unknown alien by some unknown mechanism for some unknown prupose, or is it just the beneficial ones? Did this process only occur in the past or is it still going on today? Got any evidence whatsoever for this or are you just content to try to claim that evolution couldn't happen without guidance?

By the way, you claim that you believe in evolution and yet you also claim that it couldn't have produced the organisms we see today without guidance. Exactly how can you claim to believe in evolution then? And who did the guiding? Why did they do it? How did they do it? When did they do it? Did they just introduce mutations and then stand back, or do they determine the outcome of selection as well? If not, why not? If so, then evolution really didn;t occur at all did it? If you can't answer these questions then you really don't have anything to offer at all. Don't worry, no one can force you to believe in evolution, especially if you already claim to.

Mike Elzinga · 24 February 2009

Charlie Wagner said: "Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention." No supernatural intervention but these processes are NOT unguided...Remember DNA? "Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest." I said "on earth", not "in living organisms".
Charlie, I should also point out something that you will obviously recognize because you have thought about it so deeply. Heywood’s theory is far more developed, organized, and nuanced than yours. Thus you can see that his theory is a product of a superior intelligence. But I am sure that if you contact him, he will enthusiastically offer you his insights, and perhaps even help you with your theory. However, I would caution you that Heywood is the world’s authority in this area, and he will very likely point out where you have gone wrong. There is so much missing from your theory that he has already accounted for that it is impossible that you can be correct.

Henry J · 24 February 2009

First of all, I do not argue for “design”. It’s a loaded word with too much baggage. And it begs the question: “who is the designer. You can detect intelligence in nature by the presence of organization.

That doesn't get rid of the question of who is the designer. It only substitutes the word "organizer" for the word "designer", but gives it the same meaning.

This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There’s simply no way to get around that basic point.

Variation by means of mutations and recombination. Natural selection, other types of selection, genetic drift. Feedback loop. Your "basic point" has been gotten around. Henry

Mike Elzinga · 25 February 2009

neo-anti-luddite said: That's Charlie, all right. He never fails to fail to impress....
I think we can all agree that Charlie rates far below PBH.

Mike Elzinga · 25 February 2009

Charlie Wagner said: "Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention." No supernatural intervention but these processes are NOT unguided...Remember DNA? "Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest." I said "on earth", not "in living organisms".
Oops; I see I didn’t get the name of your new theory correct. I guess you call it the theory of “Intelligent Input”. Well, the name doesn’t really matter, it’s the content. But seriously, Philip Bruce Heywood is the world’s leading authority in these matters. You really need to contact him.

Dan · 25 February 2009

Charlie Wagner said: The Darwinian paradigm holds that copying mistakes and the shuffling of existing genes are sufficient to write the new genes needed for evolutionary advances.
Charlie has already demonstrated that he doesn't understand entropy, or probability, or phase space. He doesn't even understand his own (circular) definition of "organization." He has demonstrated that he doesn't understand the relation between random mutation and guiding natural selection. He states by fiat that he understands evolution better than Darwin did and better than Dawkins does. Now he makes another claim about "the Darwinian paradigm." Certainly the claim above is false, because Darwin didn't know about genes. Perhaps Charlie means "The theory of evolution holds..." Even when so modified, the proposition is false. Gene duplication plays an essential role in evolution: otherwise all organisms would have the same number of genes. Charlie's claim that evolution involves only "copying mistakes and the shuffling of existing genes" is (using the language of Judge Jones) "utterly false."

eric · 25 February 2009

Charlie Wagner said: You ask questions that have no answers. I recognize that intelligent input is a requirement but I don't have a clue where this intelligence comes from.
Charlie, You've been honest and forthright, which is pleasantly refreshing, but I think you've missed Stanton's point. There is lots of organization (your word) in nature. The ID claim is that some of it has a property of organization could only come from intelligence. But not everything has this property. You claim that you can detect this property - that you can separate the intelligently designed bits from the rest. Every example you or other ID proponents give is, in essence, a claim that you have done the detection and (at least tentatively) found this property. So given that IDers claim they already have an 'intelligent organization detector,' and that they've already used it, we'd like to see it please. We want to know how it works. And if you can't produce it, then please don't take offense when we presume that your 'examples' are really just unsubstantiated guesses and ID doesn't actually have the detector that IDers claim they've been using for the past 20 years.

eric · 25 February 2009

mrg said: And what distinguishes "good" from "bad"? Nothing but the attentiveness of the Grim Reaper that lets the "good" predominate at the expense of the "bad". There's no way to just look at the sequence and say "good" or "bad".
Yep. Sometimes the organism's environment five or ten years down the road determines whether a genetic change was "good" or "bad." And many organisms can move environments in that time. Or alter their own environment, essentially having a say in whether a mutation is good or bad. The IDer's 2LOT interpretation requires the 2LOT to have extensive foreknowledge of the future. (And, incidently, that this intelligence be malevolent in that it actively works to prevent the improvement of fit of organisms to their environments).

Robin · 25 February 2009

mrg said:
eric said: Physical laws have - and can have - NO foreknowledge of what phenotype will be built from a mutational change in the genotype.
And what distinguishes "good" from "bad"? Nothing but the attentiveness of the Grim Reaper that lets the "good" predominate at the expense of the "bad". There's no way to just look at the sequence and say "good" or "bad". That gradual adaptation is what it's all about, and it can do a lot -- what good is half an eye? It's 1% better than 49% of an eye. This is exactly what would be expected under Darwinian evolution and exactly what is observed. Cheers -- MrG / http://www.vectorsite.net/gblog.html
Hmmm...it seems there's a slight (albeit indirect) contradiction here, Greg. On the one hand you say (and I think correctly) that the only thing that distinguishes "good" vs "bad" in terms of evolutionary change is the attentiveness of the Grim Reaper. You then say that a half an eye is 1% "better" than 49% of an eye. To be consistent though, 49% of an eye might actually be "better" than 50% - it depends on which gets by the Grim Reaper in a given environment.

stevaroni · 25 February 2009

Charlie Wagner said: “Um, two out of three of those are unguided chemical processes, which seem to require no supernatural intervention.” No supernatural intervention but these processes are NOT unguided…Remember DNA? “Chemosynthesis certainly works outside living organisms, as anyone who has dealt with endothermic catalyzed reactions (say, for example, a high school chemistry teacher) will attest.” I said “on earth”, not “in living organisms”.

I'm just a product of the American public schools, so correct me if I'm wrong here, but it seems to me that processes which occur "on Earth", but not "in living organisms" don't usually use DNA in the first place.

Robin · 25 February 2009

Charlie Wagner said: You can detect intelligence in nature by the presence of organization. Living systems are made up of structures and processes integrated in such a way that they not only support each other, but they contribute to the overall function of the living system. This type of organization, in which means are adapted to ends and multiple structures and processes perform multiple functions, all of which contribute to the overall functioning of the organism are unattainable by any kind of random process or chance occurrence. It requires insight and insight means intelligence. There's simply no way to get around that basic point.
This is called question begging.

Henry J · 25 February 2009

Gene duplication plays an essential role in evolution: otherwise all organisms would have the same number of genes. Charlie’s claim that evolution involves only “copying mistakes and the shuffling of existing genes” is (using the language of Judge Jones) “utterly false.”

Maybe duplication falls under the "copying mistakes" category? ;)

mrg · 25 February 2009

Robin said: To be consistent though, 49% of an eye might actually be "better" than 50% - it depends on which gets by the Grim Reaper in a given environment.
Yah, it is better because the Grim Reaper has decided it is so. What's the term? -- ah, "differential selection". You don't have a one eye that's 1% better than the other, you have a population that could be represented by, say, a bell-shaped curve for eye effectiveness that ranges in a continuous fashion over a few percent. If eyesight is important to making a living or staying alive, the median of the curve keeps shifting towards better eyesight (at least until diminishing returns sets in). Mutations are haphazard changes resulting in haphazard changes in the biosystem. The Grim Reaper simply tosses those that don't work out so hot. The interesting thing is that the ones that do work out hot can end up, after vast generations of accumulated and selected tweaks, as something that could win a prize for engineering design. But the only criteria for getting there was species survival. Dawkins has been thoroughly flamed for his comments about "the illusion of Design" and "things that appear to have been Designed for a purpose" ... sometimes he can come across as heavy-handed but in that case he was dead on the money. Cheers -- MrG / http://www.vectorsite.net/gblog.html

stevaroni · 25 February 2009

what good is half an eye? It’s 1% better than 49% of an eye.

Oddly, I actually knew somebody with half an eye. She said it was very useful indeed. I know I've told this story before, so bear with me, but I has a relative who, as a young woman in the 60's, badly injured her left eye. In a few years, the lens clouded and hardened into a completely opaque cataract. Her doctors removed the cataract, but at that time eye surgery was a stone-knives-and-bearskins deal. The surgery was fairly invasive, removed the lens with no replacement, left a secondary hole in the sclera, oh, and you had to spend three days after the surgery on your back with your head immobilized with sandbags. Though Cathy still had a retina, she could only make an image with the aid of a contact lens and supplemental glasses. Even then, the image was permanently focused at infinity, and the magnification was so wrong she could never fuse the stereo pair and it gave her headaches. Consequently, she never wore the corrective lenses. She had, essentially, a "pit" eye, without any lens whatsoever. Still, she was adamant that it was still very useful. Though it only imaged moving blobs, it still gave her important peripheral information about what was going on on the left side of her body. It was especially useful during driving. In sunlight, her iris would contract enough to add a little sharpness to the blobs, and it gave her enough sense of what was going on in the next lane that she didn't have to constantly swivel her head. So I, for one, don't have to speculate about what good "half an eye" might be. I have first hand testimony that it is very useful indeed.

Misha · 25 February 2009

mrg said: what good is half an eye? It's 1% better than 49% of an eye. This is exactly what would be expected under Darwinian evolution and exactly what is observed.
I know its being nitpicky, but you're selling small advancements short. 50% of an eye is not 1% better than 49% of an eye. Although it may be 1% closer to a full eye, when comparing a 50% eye with a 49% eye the 50% eye is actually 2.04% better than a 49% eye. See, the "Grim Reaper" has no idea that the 50% eye is on its way to becomming a 100% eye. All it knows is that 50 is 102.04% of 49. So, to actually improve the 49% eye's performance by 1% you only need a 49.49% eye, a much smaller step. Of course this doesn't even take into account all the parameters that could be improved. What optic trait did this small change improve? Focal distance, Color recognition, spherical aberration? A 1% improvement in any optical trait could be extremely beneficial. mrg, I know the point you were trying to make. You wanted to show how "half an eye" is beneficial. However, you're underestimating the value of small modifications because you're looking at the final product. But the amazing part is that the 8th grade algebra students I used to teach can do this type of math. Somehow, relative percentages gets lost with the Creationists and their sub-species, IDers.

eric · 25 February 2009

mrg said: You don't have a one eye that's 1% better than the other, you have a population that could be represented by, say, a bell-shaped curve for eye effectiveness that ranges in a continuous fashion over a few percent.
Oh no, the problem for IDers is even worse than that. Eye A may give a 1% advantage over eye B in environment A', but eye B may give an advantage over A in environment B'. That's why its simply nonsensical to claim that mutation via natural selection can't produce improvement: what counts as an "improvement" is dependent on the specific details of the local conditions, information that is physically and temporally unavailble to DNA replication processes. How could the failure to develop an eye ever possibly be an advantage? When is not being able to see better than being able to see? When could poor sight ever be a better adaptation than good sight? Well, every structure has an opportunity cost. Cave moles don't waste their calories growing eyes. And humans don't waste their neurons supporting vision as good as a hawks. eric

Mike Elzinga · 25 February 2009

Here are some comparisons of Charlie Wagner’s Theory of Intelligent Input and Philip Bruce Heywood’s Theory of Quantum Computation. Here is Philip Bruce Heywood’s stuff, and here is Charlie’s stuff. I won’t belabor the comparisons with a long post, lurkers can go to the links and compare for themselves, so I will simply highlight some intellectual differences between PBH and Charlie. Charlie especially may find this interesting but disconcerting. It appears that Charlie’s most significant life’s work has been blown out of the water and superseded by a Queenslander in Australia. PBH proposes mechanisms where Charlie just waves his hands and speculates. Here is Charlie upon making observations about order and organization:

I have proposed Nelson's Law…

Which is:

Based on these observations and experiments, Nelson’s Law is proposed. In its simplest form, Nelson’s Law states that “things do not organize* themselves without intelligent guidance”.

Badda boom! Here is Philip Bruce Heywood in his first sentence:

There must be a superior, as yet undetected, signaling [sic] capability in Nature.

Charlie goes through a whole bunch of observations and simply claims that it can’t happen without intelligence. No mechanism, no identification of the characteristics of that mechanism, just a vacuous assertion. Here is Philip Bruce Heywood again:

The signalling [sic] system must be able to communicate with living cells. The information carrier almost has to be some sort of waveform. Gravity is sufficiently mysterious to qualify as a candidate, but have we yet exhausted all the possibilities of electro-magnetism? The communications medium has to be more sophisticated than straightforward radio-type transmissions, but for purposes of testing options, let us for current purposes propose an adjunct or an associate of electro-magnetism as the medium, leaving the deep question of gravity in reserve.

Note that, compared to Charlie, PBH is already thinking about specific mechanisms early on. PBH then goes on to explore what might work and assembles a complex theory that pulls together all his insights. Charlie does none of this. Finally, PBH goes through a whole bunch of events in nature and sees what his Quantum Computer does. He concludes:

The quantum computer performed. Can that (presumably) quantum-class communications capability be simulated, revisited, or imitated in some way? Is the tree of life for the healing of the nations (Rev.22:2) in some limited way, even now? And, in passing: if quantum-type computation implicating the solar system is assumed as an aspect of nature, the biblical account of origins and other hitherto mysterious parts of the Bible suddenly become hard fact. We have total correlation with the fossil record. The above deductions are a necessary outcome of taking that Book as the first document of quantum computation. Terms employed in the first chapters of Genesis and elsewhere are "to the manor born" in relation to this branch of science.

And here are Charlie’s lame conclusions after several paragraphs of hand waving:

The design and assembly of such a machine could not have occurred without intelligent input anymore than your computer could have built itself.

The comparisons speak for themselves. Charlie has been outgunned.

Robin · 25 February 2009

eric said: Oh no, the problem for IDers is even worse than that. Eye A may give a 1% advantage over eye B in environment A', but eye B may give an advantage over A in environment B'. That's why its simply nonsensical to claim that mutation via natural selection can't produce improvement: what counts as an "improvement" is dependent on the specific details of the local conditions, information that is physically and temporally unavailble to DNA replication processes. How could the failure to develop an eye ever possibly be an advantage? When is not being able to see better than being able to see? When could poor sight ever be a better adaptation than good sight? Well, every structure has an opportunity cost. Cave moles don't waste their calories growing eyes. And humans don't waste their neurons supporting vision as good as a hawks. eric
Bingo! This is the point I was trying to get across. My apologies on poorly articulating it and I thank you Eric for addressing it better.

mrg · 25 February 2009

eric said: Cave moles don't waste their calories growing eyes. And humans don't waste their neurons supporting vision as good as a hawks.
But but but ... these are proofs that DARWINIAN EVOLUTION DOESN'T WORK! Darwinian evolution can ONLY result in the DEGENERATION OF FEATURES! It CANNOT PROVIDE NEW INFORMATION! And if Darwinian evolution were true then it SHOULD have provided us with eyes as good as a falcon's. They would have been an ADVANTAGE! SO WHY DIDN"T THEY HAPPEN?! Oh dear, I'm finding it too easy to think like a Darwin-basher. As least I was able to hold the line at multiple exclamation points. Cheers -- MrG / http://www.vectorsite.net/gblog.html

eric · 25 February 2009

Robin said: Bingo! This is the point I was trying to get across. My apologies on poorly articulating it and I thank you Eric for addressing it better.
I would say 'great minds think alike' but you may not want to be brought down to my level. I'm a lowly chemist, stuck halfway between the 'superior because its more fundamental' physicists and the 'superior because its more complicated' biologists. :-)

Charlie Wagner · 25 February 2009

"Just in case you didn’t get the significance of Philip Bruce Heywood, here is a link to his First Book of Quantum Computation. As you can see, just this first chapter alone puts your Cosmic Ancestry to shame. And there is much more on his web site." I read the whole paper. It fails in the very first sentence!

There must be a superior, as yet undetected, signalling capability in Nature.

This is an unproven (and audacious!) assumption on which he bases his whole theory. My coclusion: Horsepooky

mrg · 25 February 2009

The digit display on my irony meter just overflowed.

gregwrld · 25 February 2009

That's not an argument, Charlie it's just an emotional reaction (surprise...).

Address the man's points, show us what you actually know.

And answer my question: is the 2nd Law time-dependent? Are there more ordered states in the past than in the future?

gregwrld

Charlie Wagner · 25 February 2009

"“Just in case you didn’t get the significance of Philip Bruce Heywood,"

You do realize that he's a creationist, right?

"Heywood makes the relevant point that God was, and still is, intimately involved in his creation. He is intimately involved with each one of us, and gives us a reason and purpose for living. This needs to be widely taught in our schools, churches and families."

http://www.creationtheory.com/printed.html

"Although there is a great deal of science included within the pages of this book (The Tree of Life and the Origin of the Species.), the reader does not need to have a broad understanding of science, for Heywood has done an excellent job of simplifying the complex so that everyone can understand the various ideas …. . …His goal is not to promote himself or his theory, but to see God glorified. For that he is to be congratulated."

From his biography at the above website:

PHILIP BRUCE HEYWOOD (b.1953).
….claims to be distinguished only as the most consummate of all fools and the chief of sinful men. He barely qualified for the University of Queensland, attending a Geology Department recently vacated by the world-respected anatomist, Dorothy Hill. With some difficulty, both on his own part and on that of the staff, he procured a B. Sc.(hons), under the dedicated tutorship of a staff that accepted evolution, but did not subscribe to Evolutionism, the personal philosophy. Some of the staff had once enjoyed personal contact with the "old school" of science pioneers, and possessed something of the aura of the great Seekers of truth. The author worked as a geologist, with a few completely obscure publications to his name. His calling lay firstly with farming/grazing.
Whilst caring for land under that remarkable evolution (unfolding) of a series of natural near-disasters - the Australian climate - he indulged in a minor, origins-related, educational project. Knowing that confusion reigned in these matters, and knowing little else, he asked for Higher revelation, to enable the project to proceed. The outcome begins to be tabulated herewith. Although all but disinterested in the topic, he saw a potential benefit in presenting some of these remarkable developments to the public.
For him, it has been a privilege to expound these truths. It is gratifying, after having set the story in print, to discover that the pioneering anatomists, especially Cuvier and Owen - of whom the author was in blissful ignorance - came to similar or identical conclusions, with much less information, almost 200 years ago. They could not proceed in these matters, lacking technological backup.
It is humbling to think that even minor truths, such as these, are entrusted to men.

GuyeFaux · 25 February 2009

That last post is all ad hominems, Charlie. Address the man's points, not his backgrounds and beliefs!

Charlie Wagner · 25 February 2009

"And answer my question: is the 2nd Law time-dependent? Are there more ordered states in the past than in the future?

No. Time is an artifact

No.

There are more ordered states in the future than in the past.

In fact, the whole universe, and the life on it, is moving towards greater order. The increases in entropy that we see are local and illusory.

The cosmologists and physicists have it all backwards. It didn't start in the "past". It started in the "future". And the universe is being inexorably drawn to that consequence.

We are on an incredible journey to an unknown conclusion.

Stanton · 25 February 2009

Charlie Wagner said: "“Just in case you didn’t get the significance of Philip Bruce Heywood," You do realize that he's a creationist, right?
We tend to think of Mr Heywood not so much as an evolution-denying creationist, but more of an incompetent conversationalist so incoherent so as to make Bugs Bunny appear smotheringly staid and unpleasantly hyperconservative.

Charlie Wagner · 25 February 2009

Time is an artifact

I know because god told me! ;-) And then, God spoke to me. "This thing you call time, is an artifact, composed of eidetic simulacra. Imagine that you are wandering over the surface of the earth for all eternity. Every point on the earth's surface exists simultaneously, even though you are not present at all locations. So it is with time. Every point exists simultaneously, even though you are not there. The human mind creates beginnings and ends. There is no past, no present, no future. It's all the same thing. Every moment, every event, every joy, every tragedy exists simultaneously. Only in your world, your mind, your reality is time linear, with beginnings and ends." http://charliewagner.blogspot.com/2005/03/it-started-just-after-midnight-monday.html

stevaroni · 25 February 2009

Mike writes... Here are some comparisons of Charlie Wagner’s Theory of Intelligent Input and Philip Bruce Heywood’s Theory of Quantum Computation.

Ouch! Thanks Mike. Now my head hurts again. Owie! Owie!

DS · 25 February 2009

Charlie wrote:

"In fact, the whole universe, and the life on it, is moving towards greater order. The increases in entropy that we see are local and illusory."

Great. So the second law of thermodynamics is moot and evolution of increasing complexity is not a problem. Better inform the creationists pronto. I don't think they will agree.

Charlie, you have not answered any of my questions, or anyone else's that I can see. Please go away before you embaress yourself even more. Here is a hint: even you admit that Bruce is a pompous fraud and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas? You aren't fooling anybody, so please just go away.

This is like watching Abbott and Costello trying to convince Watson and Crick that DNA is not the genetic material. It might be good for a laugh, but it gets old real fast. I wonder if Ian thinks that Charlie read the book?

Mike Elzinga · 25 February 2009

Charlie Wagner said: "Just in case you didn’t get the significance of Philip Bruce Heywood, here is a link to his First Book of Quantum Computation. As you can see, just this first chapter alone puts your Cosmic Ancestry to shame. And there is much more on his web site." I read the whole paper. It fails in the very first sentence!

There must be a superior, as yet undetected, signalling capability in Nature.

This is an unproven (and audacious!) assumption on which he bases his whole theory. My coclusion: Horsepooky
It is understandable that having your life’s work superseded would be distressing for you. But, as anyone can see for themselves, Philip Bruce Heywood’s theory is far more structured and organized. It is therefore the product of superior intelligence. However, not to worry. I am sure that if you contact him, Philip will be quite friendly. He has a folksy, Outback manner in presenting his material, so I don’t think he would be condescending toward you. In fact, similar to you, his genius has been misunderstood by those of us in the scientific establishment. So I am sure you will find in him a kindred spirit. Another kindred spirit who will appreciate your 33 years of physics and chemistry teaching experience would be Joe Newman. Joe, as you can see from his web site, has essentially proven your theories on thermodynamics and has shown that the scientific establishment is not only wrong, but has been trying to suppress his work. In these times of energy crisis, I am sure he would appreciate your expertise; and you could very well become billionaires within the next few years. It is understandable that you might have some trepidation in contacting these experts, but I would be willing to formally introduce you to them. All that I would ask for my ability to recognize and bring together similar genius is a small remuneration of, say, ten percent of your profits over the next 10 years.

Charlie Wagner · 25 February 2009

"and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas?"

"Great spirits have always encountered violent opposition from mediocre minds"

- Albert Einstein

Mike Elzinga · 25 February 2009

Charlie Wagner said: "and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas?" "Great spirits have always encountered violent opposition from mediocre minds" - Albert Einstein
I don't think anyone here believes that makes you Albert Einstein, Charlie. Besides, Einstein was a scientist; and isn't the scientific establishment is against you?

stevaroni · 25 February 2009

Charlie Wagner said: “and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas?” “Great spirits have always encountered violent opposition from mediocre minds” - Albert Einstein

"They laughed at Galileo, they laughed at Einstein. But then again they also laughed at Bozo the Clown". "Carl Sagan"

Stanton · 25 February 2009

Charlie Wagner said: "and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas?" "Great spirits have always encountered violent opposition from mediocre minds" - Albert Einstein
So can you demonstrate how the theory of Cosmic Ancestry explains the bodyplans of Vetulicolia or the rise of antifreeze glycoprotein genes in icefish or a Escherichia coli strain developing the ability to metabolize citrate better than random mutation + natural selection + genetic drift?

fnxtr · 25 February 2009

Charlie Wagner said: "and everyone here is saying that you look absolutely amateurish in comparison. What does that tell you about your ideas?" "Great spirits have always encountered violent opposition from mediocre minds" - Albert Einstein
Isn't that worth 20 on the crank index right there?

Charlie Wagner · 25 February 2009

I'm finished.

(Daniel Plainview in "There Will Be Blood")

mrg · 25 February 2009

fnxtr said: Isn't that worth 20 on the crank index right there?
I'm holding out for the "$10,000 prize to anyone who proves me wrong." Cheers -- MrG / http://www.vectorsite.net/gblog.html

Dan · 25 February 2009

Charlie Wagner said: I'm finished.
I have to agree.

Dan · 25 February 2009

Charlie Wagner said: "Great spirits have always encountered violent opposition from mediocre minds" - Albert Einstein
This is certainly true. But it's also true that poor spirits have encountered violent opposition from mediocre minds. And that mediocre spirits have encountered violent opposition from mediocre minds. And that non spirits have encountered violent opposition from mediocre minds.

stevaroni · 25 February 2009

This is certainly true. But it’s also true that poor spirits have encountered violent opposition from mediocre minds. And that mediocre spirits have encountered violent opposition from mediocre minds. And that non spirits have encountered violent opposition from mediocre minds.

The common denominator here is the tendency of mediocre minds to reflexively oppose stuff. Violently.

Stanton · 25 February 2009

Charlie Wagner said: I'm finished. (Daniel Plainview in "There Will Be Blood")
So why are you so hesitant to demonstrate how your pet hypothesis works, and how it works better than the current science?

Mike Elzinga · 26 February 2009

stevaroni said: The common denominator here is the tendency of mediocre minds to reflexively oppose stuff. Violently.
Especially anything that requires the painful development of new neural interconnections in the brain.

Ouch! Thanks Mike. Now my head hurts again. Owie! Owie!

:-) You’re welcome! (Puts me in mind of that movie of the “Little Shop of Horrors” with Steve Martin as the dentist and Bill Murray as the patient.)

Robin · 26 February 2009

eric said:
Robin said: Bingo! This is the point I was trying to get across. My apologies on poorly articulating it and I thank you Eric for addressing it better.
I would say 'great minds think alike' but you may not want to be brought down to my level. I'm a lowly chemist, stuck halfway between the 'superior because its more fundamental' physicists and the 'superior because its more complicated' biologists. :-)
Heh! Well, since I'm hardly in a position to look down on chemists or anyone practicing scientific work of any kind, I don't think you need worry. Besides, me mum was a "lowly chemist" for some 8 or so years working at NIH, so quite frankly I have great respect for such folk. :-)

Robin · 26 February 2009

Charlie Wagner said: "And answer my question: is the 2nd Law time-dependent? Are there more ordered states in the past than in the future? No. Time is an artifact No. There are more ordered states in the future than in the past. In fact, the whole universe, and the life on it, is moving towards greater order. The increases in entropy that we see are local and illusory. The cosmologists and physicists have it all backwards. It didn't start in the "past". It started in the "future". And the universe is being inexorably drawn to that consequence. We are on an incredible journey to an unknown conclusion.
I call Poe

Henry J · 26 February 2009

I wonder what the expansion of space (due to Big Bang) does to the entropy of stuff in a finite volume of that expanding space.

eric · 26 February 2009

Henry J said: I wonder what the expansion of space (due to Big Bang) does to the entropy of stuff in a finite volume of that expanding space.
I was curious about that back when COBE results started coming in, back in the early '90s. If I remember correctly (and I could be completely wrong on this), when local expansion is faster than the speed of light it can prevent the entropy of the universe from increasing, because even particles starting out next to each other can no longer interact. But the expansion would have to be VERY fast. Inflation fast.

Henry J · 26 February 2009

I've never understood that "when local expansion is faster than the speed of light" thing. If the rate of expansion is proportional to distance, there's going to be a distance short enough to be below c. Only way I can think to have particles unable to be closer together than that distance would be if it's quantum length distance that's expanding faster than c - is that what this was saying?

Henry

Mike Elzinga · 26 February 2009

Robin said:
Charlie Wagner said: "And answer my question: is the 2nd Law time-dependent? Are there more ordered states in the past than in the future? No. Time is an artifact No. There are more ordered states in the future than in the past. In fact, the whole universe, and the life on it, is moving towards greater order. The increases in entropy that we see are local and illusory. The cosmologists and physicists have it all backwards. It didn't start in the "past". It started in the "future". And the universe is being inexorably drawn to that consequence. We are on an incredible journey to an unknown conclusion.
I call Poe
After his response to my questions about units and logarithms of probabilities, I became extremely skeptical of his claim of having spent 33 years teaching chemistry and physics. I just don’t see how someone who has spent 33 years in a physics and chemistry classroom could not comprehend the significance of units and not know how to take a logarithm. I’m inclined to believe he was faking everything he said about himself.

gregwrld · 26 February 2009

Methinks Charlie should acquaint himself better with the literature on entropy. Perhaps a read of Brain Greene's "The Fabric of the Cosmos". There's a nice section on the probability of the number of ordered states in the past versus the future.

stevaroni · 26 February 2009

I’m inclined to believe he was faking everything he said about himself.

I've been wondering about this too. Somehow this doesn't feel like Charlie is a straight-up Poe. He's been around too long and gone through too much trouble with the website and everything. But there's definitely some weird Baron Munchhausen thing that's going on. I can't really believe that he spent time teaching physics and chemistry, the phraseology in his writing is all wrong. Even if you don't believe all the science, if you spend 33 years teaching it, you still have to understand the basic idea. When we get on the chem/phys topics, I have to reach back two decades to a couple of semesters of undergrad classes, most of which involved some degree of hangover, and yet I seem to remember more background than Charlie displays after working with it for 33 years.

Mike Elzinga · 26 February 2009

Somehow this doesn’t feel like Charlie is a straight-up Poe. He’s been around too long and gone through too much trouble with the website and everything.

— stevaroni
The other claim that immediately set off a red flag for me was his “get some sympathy” claim about prostate cancer getting into his spine and making him a paraplegic. Think about that for a moment. If someone has an immediate life-threatening cancer with those kinds of consequences, why would they be pulling this kind of crap for weeks and weeks on the internet? And he claimed he just returned from harrassing someone else. I would think an honest person would have more important things to be doing and thinking about at this point in the remainder of his life. Either way, Charlie is one sick SOB.

Mike Elzinga · 26 February 2009

Henry J said: I've never understood that "when local expansion is faster than the speed of light" thing. If the rate of expansion is proportional to distance, there's going to be a distance short enough to be below c. Only way I can think to have particles unable to be closer together than that distance would be if it's quantum length distance that's expanding faster than c - is that what this was saying? Henry
One of the ways “forbidden” events can happen is if they take place within ranges where Heisenberg’s uncertainty principle still holds. Apparent violations can occur as long as they get “ironed out” in the “long run” (within a period of time such that these violations don’t propagate into large scales). But frontier cosmology and astrophysics is pushing the boundaries of current knowledge with various hypotheses and theories about other dimensions, some of which are “hidden”, “rolled up” or “tiny” except under extraordinary circumstances. For example, perhaps certain particles can tunnel into and out of “short” extra dimensions and modify the effects of their resultant forces on short space-time scales. Perhaps many of the forces we are familiar with, especially gravity, exist within higher dimensional spaces but what we experience are the effects “projected onto” the 4-dimensional space-time in which we “swim”. Fun stuff, but it still has to go through peer-review and experimental testing. And, taking a swipe at the ID/Creationists, there is still a lot of good stuff coming out of this theorizing even though the theories aren’t established science at this point. There are award-winning breakthroughs in mathematical techniques and understandings as well as the establishment and organization of ideas into clusters on which future research can be done. On the other hand, absolutely nothing of scientific or mathematical value comes of ID/Creationism; only a cataloguing of political obstructionist techniques and propaganda. And even then, the scientific community has to do all the work.

Mike Elzinga · 26 February 2009

Henry J said: I've never understood that "when local expansion is faster than the speed of light" thing. Henry
I forgot to address this. One way to address it is by using higher dimensions. Here is an analogy. Suppose a huge 2-dimensional wall of gas spread out in 3-dimensional space. Suppose a star, off in a direction perpendicular to the wall, goes supernova and a spherical shell of high energy gamma rays expands and eventually intersects the wall of gas and excites the molecules of the gas to emit radiation. If the supernova is at a considerable distance from the wall of gas, the spherical shell could have very little curvature by the time it reaches the wall. The spherical shell intersects the wall of gas in a complete circle. If the curvature of the shell is small enough, the circle of intersection will expand within the wall of gas at a speed far exceeding the velocity of light. Creatures living within that wall of gas will see an expanding circle of glowing gas traveling faster than light. Analogously, if the expansion of our 4-dimensional universe is a manifestation of an “explosion” taking place in a higher dimensional space on a dimension “perpendicular” to our 4-D space time, then the speed of that expansion as seen in our universe could be much faster than light. That’s just one of a number of possible explanations.