Report on virtual workshop on origin of life

Posted 10 November 2010 by

My colleague Gary Hurd has spent much of the last 3 days virtually attending a virtual workshop on the origin of life. The workshop will conclude at 5 p.m. eastern standard time today. Here is Mr. Hurd's report, which he filed at about noon eastern time: We have reached day 3 of the NAI Workshop "Molecular Paleontology and Resurrection: Rewinding the Tape of Life." The on-line format of the talks has been a standard PowerPoint conference show, with the added attraction on my part that I can talk on the phone or get a favorite beverage as needed. The content has been excellent. I have yet to hear a weak or underprepared talk. Click here for the agenda and abstracts. The workshop was sponsored by NASA's Astrobiology Institute, but the actual presentations are essentially origin-of-life research, or the evolution of specific metabolic or chemical pathways in microbes. The talks were occasionally over the head of someone (like me) who reads OOL literature as it relates to the creationist assault on science. But there were several that directly applied to the sort of claims we hear so often from creationists. A few years ago, creationist Mike Behe wrote, "Professor Bottaro, perhaps sensing that the paper he cites won't be persuasive to people who are skeptical of Darwinian claims, laments that 'Behe and other ID advocates will retreat further and further into impossible demands, such as asking for mutation-by-mutation accounts of specific evolutionary pathways...' Well, yes, of course that's exactly what I ask of Darwinian claims--a mutation-by-mutation account of critical steps (which will likely be very, very many), at the amino acid level." And Behe then demanded, "...not only a list of mutations, but also a detailed account of the selective pressures that would be operating, the difficulties such changes would cause for the organism, the expected time scale over which the changes would be expected to occur, the likely population sizes available in the relevant ancestral species at each step, other potential ways to solve the problem which might interfere, and much more." Well, several papers came very close to meeting Behe's demands; even the "much more" was available. I had just one complaint about the overall experience, and that was the chance to discuss the talks with presenters or other audience members. I think it is the hallway discussions that make a real conference work. The purpose of this thread is to discuss the conference and more generally the current status of origin-of-life research, and to show us how abiogenesis is used by creationists to attack science and science education.

326 Comments

Ichthyic · 10 November 2010

I only could grab snippets of the talks, but from what I saw, I was quite impressed both with the presentation format, and the information presented in the talks themselves.

I'm very much looking forward to grabbing permanent copies of some of the talks once they become available.

The only thing that was a problem for me, and likely that's personal, was that this format makes it a bit too easy to get distracted by other things, and I kinda miss the personal interaction with speakers you get at an "in the flesh" conference.

no chance for followups, either, really.

Still, I think this format has quite a lot going for it. I would not like to see it replace actual conferences, but would very much like to see this as a regular addition.

Does anyone know if this is indeed an experiment in replacement? or is it actually intended to be an add-on experience?

Ichthyic · 10 November 2010

Well, several papers came very close to meeting Behe’s [ridiculous] demands

fixed.

;)

BKA · 10 November 2010

Thank you for this idea.

SIW · 10 November 2010

Such a great workshop! Thanks so much to the organizer who did such a fantastic job, and to NAI for hosting such an awesome event!!

The talks were great. I am glad to see so much in the chat bar - particularly references to related work. It is great to see side discussions in real time. Hopefully the chat will be available to reference later, there was a lot of great information in the chat in addition to in the talks.

To address Ichthyic's comment, I think the format is intended to be an add-on experience to stimulate discussion and collaboration among researchers at different institutions. However I think the format is great for other reasons. Primarily that 1) It gives a fantastic update of current research in the field and 2) it is accessible to people everywhere - widening the the audience that would normally attend such an event. To reiterate what others have been saying about the workshop - it is certainly not a replacement for conferences where people meet face-to-face and often some of the best conversations occur over coffee or in corridors. Those types of interactions are great for building new collaborations, which is more difficult to do within the format of an online workshop. However, the format is obviously a great addition to the normal routine! (and I do think new collaborations are coming out of the workshop - another great outcome!)

Nice work organizing committee and NAI!

Gary Hurd · 10 November 2010

Welcome!

We just got promoted by the NASA coordinators.

John Harshman · 10 November 2010

Question from my boundless ignorance: the title and announced subject seem mutually contradictory. Origin of life research is one thing and molecular reconstruction quite another. The latter can get us back, at best, to the last common ancestor. But this isn't anywhere near the origin of life. Were presentations on either one subject or the other, with no attempt to make explicit connection? Or was there actually some way to relate reconstruction efforts to the origin of life, and if so, how would that be done?

Gary Hurd · 10 November 2010

A number of papers presented today used the notion of "network connectedness." But there are several kinds of network connectedness, at least in the graph theory study of networks.

Gary Hurd · 10 November 2010

John Harshman said: Question from my boundless ignorance: the title and announced subject seem mutually contradictory. Origin of life research is one thing and molecular reconstruction quite another. The latter can get us back, at best, to the last common ancestor. But this isn't anywhere near the origin of life. Were presentations on either one subject or the other, with no attempt to make explicit connection? Or was there actually some way to relate reconstruction efforts to the origin of life, and if so, how would that be done?
Actually there were several papers that projected past the LUCA based on chemistry...

Wendy Dolci · 10 November 2010

Hi, Wendy Dolci from the NASA Astrobiology Institute central office here. Glad to see this discussion about the Workshop Without Walls! We'll take note of any suggestions posted, and consider them for next time. Thanks for joining us for the workshop!

Scott F · 10 November 2010

I find the abstracts fascinating, but don't have time during the day to pay attention. Will the full presentations be available at some point?

Thanks.

Gary Hurd · 10 November 2010

Man oh man

It was such a great time to spend just listening to scientists talking science.

I spend so much time with creationists that my brain was melting

Gary Hurd · 10 November 2010

@Loren Williams

I really enjoyed your talk. It seems to me that the first AAs were the so-called "Miller" amino acids. They are the most readily formed, and for the most part they abotically form in a racemic mix. Leaning heavily on Gramicidin A as a model, why not have racemic peptides form abiotically, and then be "copied" by RNA.

Loren Williams · 10 November 2010

John Harshman said: Question from my boundless ignorance: the title and announced subject seem mutually contradictory. Origin of life research is one thing and molecular reconstruction quite another. The latter can get us back, at best, to the last common ancestor. But this isn't anywhere near the origin of life. Were presentations on either one subject or the other, with no attempt to make explicit connection? Or was there actually some way to relate reconstruction efforts to the origin of life, and if so, how would that be done?
Hi John, This is Loren Williams from the meeting. What you are saying is not quite right. For example the aa-synthetases went through a series of gene duplication events prior to luca. The record of those is very clear (see Koonin). So we can resurrect, if we like, aa-synthetases from beyond luca. Everything beyond luca is not washed out. Loren

Gary Hurd · 10 November 2010

Wendy Dolci said: Hi, Wendy Dolci from the NASA Astrobiology Institute central office here. Glad to see this discussion about the Workshop Without Walls! We'll take note of any suggestions posted, and consider them for next time. Thanks for joining us for the workshop!
I think the schedule was a bit too packed. That is why I thought that this post-conference discussion could be a virtual "barroom," or hallway chat.

Gary Hurd · 10 November 2010

Most of my directly relevant work was the trace element composition of clay. This turns out to matter when we look at the papers regarding minerals and the origin of life.

One question for the presenters of papers regarding montmorillonite and OOL is have you looked at the heavy metal substitution centers in the clay crystal?

John Hewitt · 10 November 2010

I did see much of this and found many of the talks fascinating. Of course, the last one (by Williams) remains the most memorable, perhaps due to a short attention span on my part.

I am left wondering whether anyone has linked the layers of the ribosomal onion to the correction of amino acid insertion errors which, as I recall, is powered by GTP hydrolysis. Which proteins are involved and in which layer is it located? More generally, which new functionalities appear with each layer? Where in the tunnel is it located?

Estelle Dodson · 10 November 2010

Hi All,

We are noting your comments to improve the format of future workshops - increased discussion time is a top suggestion. Please help us capture others by taking the survey at: http://www.surveymonkey.com/s/ool-www

Loren Williams · 10 November 2010

Gary Hurd said: @Loren Williams I really enjoyed your talk. It seems to me that the first AAs were the so-called "Miller" amino acids. They are the most readily formed, and for the most part they abotically form in a racemic mix. Leaning heavily on Gramicidin A as a model, why not have racemic peptides form abiotically, and then be "copied" by RNA.
There is debate about the appropriateness of reductive during the miller experiments. So those miller ratios are not a gold standard.

Loren Williams · 10 November 2010

As one of the organizers of the meeting, I cannot say enough about the people at the NASA Astrobiology Institute. The provided all the infrastructure and expertise, etc.

JGB · 10 November 2010

I'll second the desire to see the talks posted later if possible. I had to teach during most of hte conference times, and missed a lot of the ones I was really interested in. I did wow my 7th graders with a couple of minutes of a live science conference for the fun of it.

Gary Hurd · 10 November 2010

Loren Williams said: There is debate about the appropriateness of reductive during the miller experiments. So those miller ratios are not a gold standard.
Well, the Hadean, early Archean atmosphere, and oceans were at most neutral, with strongly reductive oases. None the less, Miller's posthumous publication, Cleaves, H. James, John H. Chalmers, Antonio Lazcano, Stanley L. Miller, Jeffrey L. Bada 2008 “A Reassessment of Prebiotic Organic Synthesis in Neutral Planetary Atmospheres” Orig Life Evol Biosph (2008) 38:105–115 rather makes the redox issue mute.

Gary Hurd · 10 November 2010

Well, maybe someone will come along.

Loren Williams · 10 November 2010

Gary Hurd said: @Loren Williams I really enjoyed your talk. It seems to me that the first AAs were the so-called "Miller" amino acids. They are the most readily formed, and for the most part they abotically form in a racemic mix. Leaning heavily on Gramicidin A as a model, why not have racemic peptides form abiotically, and then be "copied" by RNA.
Hi Gary, Thanks for the kind words and all your good comments during the meeting. I am not sure people have come up with a plausible mechanism by which peptides can be copied by RNA. The idea we have is RNA makes proto-peptides, and if those peptides confer advantage then that RNA wins and continues to make those peptides. There is no back copying of peptide to RNA. But if you can come up with a mechanism for it, I am all ears.

Gary Hurd · 10 November 2010

Loren Williams said: There is no back copying of peptide to RNA. But if you can come up with a mechanism for it, I am all ears.
Point taken!

Mike Elzinga · 10 November 2010

A few years ago, creationist Mike Behe wrote, “Professor Bottaro, perhaps sensing that the paper he cites won’t be persuasive to people who are skeptical of Darwinian claims, laments that ‘Behe and other ID advocates will retreat further and further into impossible demands, such as asking for mutation-by-mutation accounts of specific evolutionary pathways…’ Well, yes, of course that’s exactly what I ask of Darwinian claims–a mutation-by-mutation account of critical steps (which will likely be very, very many), at the amino acid level.” And Behe then demanded, “…not only a list of mutations, but also a detailed account of the selective pressures that would be operating, the difficulties such changes would cause for the organism, the expected time scale over which the changes would be expected to occur, the likely population sizes available in the relevant ancestral species at each step, other potential ways to solve the problem which might interfere, and much more.”

I just love the irony in Behe’s “demands.” With the billions of examples of evolving systems from all of chemistry and physics; and with all the examples that have been elucidated in biological systems already, Behe thinks this isn’t good enough (and even said so at Dover). It is amazing that Behe doesn’t seem to understand that, given all of what we already know, it is Behe and the ID/creationist gang that are under the gun to find the “laws of physics and chemistry” that prohibit continued evolution right on up to living, replicating systems. Given all the billions of possibilities that the science community can think of, it is entirely reasonable to explore as much of what we can to narrow the possibilities. Instant gratification may be the central focus of ID/creationism and its practitioners, but it has never been a part of real science. Real scientists work.

Matt G · 10 November 2010

Great experience! I "attended" most of the talks, and will try to find the video for the ones I missed. Some talks were better than others, of course. Some presenters make complicated material simple, and some make material more complicated than it needs to be. I feel that speakers should do a better job of providing background information early in the talk for those of use less familiar with the material. Some were very good about this, and some just jumped into their data. A well made slide can make all the difference.

Betul Arslan · 10 November 2010

JGB said: I'll second the desire to see the talks posted later if possible. I had to teach during most of hte conference times, and missed a lot of the ones I was really interested in. I did wow my 7th graders with a couple of minutes of a live science conference for the fun of it.
I am so glad that you did this! What did they think? Perhaps next time we should include a session -only- for the young science enthusiasts :) Thank you very much.

Gary Hurd · 10 November 2010

I did many years of clay trace element chemistry- all before STM. What I would do today would be a trace element analysis of montmorillonite to identify reaction sites. Then I'd look at marine clays like attapulgite.

Gary Hurd · 10 November 2010

Betul Arslan said: JGB said: I'll second the desire to see the talks posted later if possible. I had to teach during most of hte conference times, and missed a lot of the ones I was really interested in. I did wow my 7th graders with a couple of minutes of a live science conference for the fun of it.

I am so glad that you did this! What did they think? Perhaps next time we should include a session -only- for the young science enthusiasts :) Thank you very much. Well, I am a young 60 year old. ;-) But you both are totally correct. The best way to teach science is to show students how to do science, and how scientists really deal with colleagues. There was a classic exchange yesterday on the chat window, where two researchers traded their PNAC publications back and forth at each other.

George Fox · 10 November 2010

John Hewitt said: I did see much of this and found many of the talks fascinating. Of course, the last one (by Williams) remains the most memorable, perhaps due to a short attention span on my part. I am left wondering whether anyone has linked the layers of the ribosomal onion to the correction of amino acid insertion errors which, as I recall, is powered by GTP hydrolysis. Which proteins are involved and in which layer is it located? More generally, which new functionalities appear with each layer? Where in the tunnel is it located?
The tunnel begins at the PTC where the CCA ends of the A site and P site tRNAs meet and then contiues to the back of the ribosome where it emerges to be greated by the signal recognition particle and trigger factor. Ribosomal protein L29 and L39e are near the exit. The tunnel length is about 93 Angstroms long and the tunnel "wall" is mostly RNA

Loren Williams · 10 November 2010

Hi George,
Good talk, thanks.
Loren

Loren Williams · 10 November 2010

The NAI has posted day 1 recordings on the website and will be posting the rest over the next day or 2.

http://astrobiology.nasa.gov/nai/ool-www/program/

Mike Elzinga · 10 November 2010

How long will the videos of these talks be available online?

Doc Bill · 10 November 2010

Ha, ha, Behe, ha ha! Seriously? Science has to satisfy the delusions of a washed-up, D-list creationist professor of freshman biochemistry at a podunk (sorry Lehigh) university? Really?

I'd say, "Thank you, Dr. Dark Ages, why don't you get a cup of tea and take your meds."

Although, I would like to thank Dr. Behe for giving us the Kitzmiller victory. That was actually pretty cool and very generous.

John Harshman · 10 November 2010

Loren Williams said:
John Harshman said: Question from my boundless ignorance: the title and announced subject seem mutually contradictory. Origin of life research is one thing and molecular reconstruction quite another. The latter can get us back, at best, to the last common ancestor. But this isn't anywhere near the origin of life. Were presentations on either one subject or the other, with no attempt to make explicit connection? Or was there actually some way to relate reconstruction efforts to the origin of life, and if so, how would that be done?
Hi John, This is Loren Williams from the meeting. What you are saying is not quite right. For example the aa-synthetases went through a series of gene duplication events prior to luca. The record of those is very clear (see Koonin). So we can resurrect, if we like, aa-synthetases from beyond luca. Everything beyond luca is not washed out. Loren
Thanks, but I don't think that quite addresses the point. It may be that the LUCA of organisms is, because of duplications, later than the LUCA of a particular protein. But we still can't push back, using that sort of technique, anywhere near the origin of life. Can we? If there's an RNA world, before protein, then no protein can tell us anything about that, for example.

Ichthyic · 10 November 2010

suggestions:

-a formalized "coffee room" that is distinct from the chat window where questions are asked of individual presenters.

-some way of being able to control which windows are open in the application. sometimes, I would have liked to close the window that showed the video conference room, as I'm repeatedly in areas with low bandwidth, and would have liked to just focus all of my bandwidth on the speaker's presentation window and voice.

-vary the talk lengths; have some be 30 mins, some 45, some 1 hr. Not all information is presentable in a short time window, OTOH some people only need 20 mins to present a nice view of what they want to share.

this will allow people more flexibility in their talks.

-add a poster session area.

-add a period of formal discussion each day for presenters to discuss each others work, NOT open to general questions, but observable by everyone. IMO, this is a great way to learn about areas of interest that aren't one's own specialty, because good questions are hard to ask if one isn't entirely familiar with the material. I often learn tons by listening to those who know more than I about any given field discuss relevant issues.

Overall, I'm extremely impressed with how smoothly this went, with very few glitches. Hell, I've seen more glitches with standard slide projectors!

congrats!

Ichthyic · 10 November 2010

If there’s an RNA world, before protein, then no protein can tell us anything about that, for example.

sure it can!

think about it this way:

if you start with a Ford factory, it's pretty unlikely your first vehicle is gonna be an airplane.

IOW, what we know about early proteins WILL inform us as to what the framework precursors were, and what the constraints were.

Or am I misunderstanding what you were looking for? Because AFAIK, there is no other way to approach this issue.

Gary Hurd · 10 November 2010

Ichthyic said: I've seen more glitches with standard slide projectors! congrats!
Heheh I once was about to give a conference talk, and the slide tray dropped, and all my slides dumpted onto the floor.

Ichthyic · 10 November 2010

I once was about to give a conference talk, and the slide tray dropped, and all my slides dumpted onto the floor.

I recall giving a talk once where someone must have spilled something on, or just never cleaned, an older model slide projector, and it literally caught on fire* during my talk (those old slide bulbs get HOT!).

I only lost 1 or 2 slides, but still...

*seriously! there must have been lint buildup or something, which caught on the lamp, and then caught the slide tray on fire.

Gary Hurd · 10 November 2010

Ichthyic said: I recall giving a talk once where someone must have spilled something on, or just never cleaned, an older model slide projector, and it literally caught on fire* during my talk (those old slide bulbs get HOT!).
You win. Or is it, You lose?

Ichthyic · 10 November 2010

I'll go with "lose" on that one.

...for more amusing anecdotes of destruction, let me tell you how I lost my car on 90 mile beach sometime.

:p

hell, I know I've been meaning to email you for a while now; I'll toss that one in there, since it happened my first year here in NZ.

Loren Williams · 10 November 2010

LUCA is not an event horizon, not at all. For example part of ribosomal protein L2 is clearly older than LUCA, and is a fossil of proto-protein. What is to stop us from resurrecting it? Nothing, because we already have done it. And we can resurrect the RNA, too. The core of the ribosome (LSU) comes from pre-coded protein world. We can resurrect that, and study it and test predictions. In fact that is exactly what we are doing.

John Harshman · 10 November 2010

Loren Williams said: LUCA is not an event horizon, not at all. For example part of ribosomal protein L2 is clearly older than LUCA, and is a fossil of proto-protein. What is to stop us from resurrecting it? Nothing, because we already have done it. And we can resurrect the RNA, too. The core of the ribosome (LSU) comes from pre-coded protein world. We can resurrect that, and study it and test predictions. In fact that is exactly what we are doing.
But can you go past the common ancestor of L2, when resurrecting L2? Can you go past the common ancestor of the rRNA when resurrecting rRNAs? Everything coalesces, even if different parts of the genome have coalescence ages early than the genomic LUCA, and this method doesn't look past that coalescence, whenever that may be. It's certainly a quite valuable thing to do, and tells us much about early life, that is about the common ancestor of whatever piece of peptide or polynucleotide you're looking at. But does it illuminate the origin of life? That I'm not sure.

JGB · 10 November 2010

My group of 7th graders seemed pretty receptive. Unfortunately it was a very spur of the moment decision, and it's a chemistry class, so it was hard to tie it in too much with Kosuke Fushijima's talk. I mostly just wanted them to get a peak and let them know that were building the skills they need to be able to get something out of a talk like that in a couple of years.

With the other talks posted now I'm going to take a look and see if I can find some segments for my 9th grade biology students. Especially since we're almost to trimester 2, which means 10 weeks on evolution and classification!

Ichthyic · 10 November 2010

But does it illuminate the origin of life? That I’m not sure.

I repeat, consider the issue of constraints.

that is all.

JGB · 10 November 2010

Jumping in to John and Loren's discussion, I think it remains to be seen what kind of resolution we can get of the reconstructions. There is so much to be learned just doing 1st level reconstructions on a single molecule (or similar group), who can really predict what insights might happen down the road if we can start putting together larger chunks of reconstructed biochemistry? Ultimately, I think Loren's is right it's not an event horizon, but digging deeper does present some big challenges.

Loren Williams · 10 November 2010

Mike Elzinga said: How long will the videos of these talks be available online?
Indefinitely, I think.

Loren Williams · 10 November 2010

John, I like Carl Woese's description of LUCA. It is a diverse population of microbes just prior to speciation. It is not a homogeneous population. And I don't think it makes sense to think about the LUCA of a single gene or polymer (RNA or protein).

This is the Woese paper
Woese CR (2000) Interpreting the Universal Phylogenetic Tree. Proc. Natl. Acad. Sci. U. S. A. 97(15):8392-8396.

"The root of the universal phylogenetic tree represents the first stage in cellular evolution when the evolving cell became sufficiently integrated and stable to the erosive effects of horizontal gene transfer that true organismal lineages could exist."

Henry J · 10 November 2010

Or was there actually some way to relate reconstruction efforts to the origin of life, and if so, how would that be done?

Might the reconstructions rule out some otherwise plausible hypotheses about the initial appearance of self replicators, i.e., help to narrow the range of possible scenarios that way? Henry J

Wendy Dolci · 11 November 2010

Ichthyic said: suggestions: -a formalized "coffee room" that is distinct from the chat window where questions are asked of individual presenters. -some way of being able to control which windows are open in the application. sometimes, I would have liked to close the window that showed the video conference room, as I'm repeatedly in areas with low bandwidth, and would have liked to just focus all of my bandwidth on the speaker's presentation window and voice. -vary the talk lengths; have some be 30 mins, some 45, some 1 hr. Not all information is presentable in a short time window, OTOH some people only need 20 mins to present a nice view of what they want to share. this will allow people more flexibility in their talks. -add a poster session area. -add a period of formal discussion each day for presenters to discuss each others work, NOT open to general questions, but observable by everyone. IMO, this is a great way to learn about areas of interest that aren't one's own specialty, because good questions are hard to ask if one isn't entirely familiar with the material. I often learn tons by listening to those who know more than I about any given field discuss relevant issues. Overall, I'm extremely impressed with how smoothly this went, with very few glitches. Hell, I've seen more glitches with standard slide projectors! congrats!
Great suggestions, thank you !

Mike Elzinga · 11 November 2010

Loren Williams said:
Mike Elzinga said: How long will the videos of these talks be available online?
Indefinitely, I think.
Good! My ISP has been having some major outages during the last few weeks (apparently some major wind damage), and I haven’t been able get through the videos that are already up. I can’t stay on for more than a few minutes at a time.

Matt G · 11 November 2010

Loren Williams said:
Mike Elzinga said: How long will the videos of these talks be available online?
Indefinitely, I think.
One issue I had was with the sound. It was a little thin and had a bit of a whistle in the background. I've edited podcasts before, and sound of the talks was like that of a podcast whose bit rate has been lowered too far (32 kbps or lower in my experience). Is there any way to boost this for the videos, or was it recorded this way?

Gary Hurd · 11 November 2010

The Panda's Thumb would be a great place for the "coffee room" on the next set of talks.

I think we could get more partisipation if there is a thread open from the start of the meeting.

John Harshman · 11 November 2010

Any non-recombining bit of the genome must have a single most recent common ancestor. Homology among duplicated genes in fact relies on this. My contention is that these various common ancestors must all postdate the origin of life by some considerable degree. I think it's overselling a quite valuable technique to claim otherwise. That's all.

Paul Burnett · 11 November 2010

Did anybody else notice? Not one anti-evolution comment (yet) from FL or Byers or other creationist ignorami. They're probably all sitting there with their hands over their ears, singing "lalala.."

John Kwok · 11 November 2010

Was wondering if Koonin has said anything new that I didn't hear from him already (I saw his presentation at Rockefeller University's two day Evolution symposium nearly three years ago.). Hope I have a chance to hear his talk and yours sometime in the next few weeks:
Loren Williams said: The NAI has posted day 1 recordings on the website and will be posting the rest over the next day or 2. http://astrobiology.nasa.gov/nai/ool-www/program/

John Kwok · 11 November 2010

Don't encourage them please. Let's keep this at a sophisticated level:
Paul Burnett said: Did anybody else notice? Not one anti-evolution comment (yet) from FL or Byers or other creationist ignorami. They're probably all sitting there with their hands over their ears, singing "lalala.."

Gary Hurd · 11 November 2010

I am curious why one or two of the first day presentations are not online. Was there a technical issue, or did the presenter object?

For example, 4:20 pm – 4:40 pm EST
"Making Sense of Life’s Amino Acid Alphabet"
Steve Freeland
University of Hawaii

A good paper (as I recall) that I would like to look at again.

Mike Elzinga · 11 November 2010

Gary Hurd said: The Panda's Thumb would be a great place for the "coffee room" on the next set of talks. I think we could get more partisipation if there is a thread open from the start of the meeting.
That would be great provided that any derailing trolls be sent to the Bathroom Wall immediately and kept there if they continue to throw feces.

John Kwok · 11 November 2010

Agreed. You get a very strong endorsement from me:
Mike Elzinga said:
Gary Hurd said: The Panda's Thumb would be a great place for the "coffee room" on the next set of talks. I think we could get more partisipation if there is a thread open from the start of the meeting.
That would be great provided that any derailing trolls be sent to the Bathroom Wall immediately and kept there if they continue to throw feces.

Michael J · 11 November 2010

I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s

Gary Hurd · 11 November 2010

Michael J said: I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s
There were several papers that were directly, and thoroughly devastating to Steve Meyer's execrable book, "Signature in the Cell."

Mike Elzinga · 11 November 2010

Gary Hurd said:
Michael J said: I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s
There were several papers that were directly, and thoroughly devastating to Steve Meyer's execrable book, "Signature in the Cell."
From the few talks I have been able to listen to (my internet connection has been down a lot), I would guess that most papers would be devastating. Lynn Rothchild’s overview discussing contingency and predictability is a nice summary of the major issues. I suspect that once the pathways are understood, we will be surprised at how “obvious” they will seem. Just the discussions of the energetics and catalyses involved in proposed pathways illustrates how far out of the ballpark Meyer and the rest of the ID/creationist crowd are. It is amazing how stubborn the ID/creationist misconceptions about the underlying physics and chemistry are. Morris and Gish saddled these characters with a set of memes that have derailed them permanently. One can only hope that the kind of thinking the muddles up the ID/creationists doesn’t disrupt our working societies to the point that we never get a chance to find out how it all happened. (That may be my age speaking.)

FL · 11 November 2010

Did anybody else notice? Not one anti-evolution comment (yet) from FL or Byers or other creationist ignorami. They’re probably all sitting there with their hands over their ears, singing “lalala..”

Hey, I haven't posted anything here, Paul. I was totally content to simply listen to the the Virtual Workshop professionals offer their commentary and dialog. Prebiotic evolution remains "the weakest strut in the chassis of modern biology" (John Horgan), and honestly, this virtual workshop doesn't change that status at all. For example, three words from Steve Freeland's abstract...

"...much remains unanswered"

...effectively could be attached to the entire gig. Eugene Koonin's statement (in his abstract) that "the origin of the genetic code" remains "a wide open problem", is still true, even with whatever insights or whatnots can be provided via Koonin's article. It's still a wide open problem, right here and now. So again, much remains unanswered, and prebiotic evolution remains the weakest strut in the chassis of modern biology. Polls indicate that the majority of Americans favor intelligent design as the explanation of how life originated on Earth. However, for me, it's always interesting to check out the professional evolutionists' efforts regarding the origin-of-life issue, and so this is a good thread. FL

Mike Elzinga · 11 November 2010

FL said: However, for me, it's always interesting to check out the professional evolutionists' efforts regarding the origin-of-life issue, and so this is a good thread. FL
It is a good thread. But no one here believes it is “always interesting” to you. Too bad you haven’t picked up on why ID/creationist snarking about good research is completely bogus. And you still haven’t been able to justify the pseudo-science of your ID heroes. So just try to learn something instead of always trying to show off. We are already totally aware of your ignorance.

Ichthyic · 11 November 2010

The Panda’s Thumb would be a great place for the “coffee room” on the next set of talks.

I'd be thinking some sort of area where we could set up something like ventrilo to organize group chats and whatnot.

http://www.ventrilo.com/

I played WoW for a month, and I quickly got bored of it, but one thing I did pick up was the value and ease of setting up voice conferencing with that software.

very easy to set up infinite channels for group discussions, public or private.

Ichthyic · 11 November 2010

Prebiotic evolution remains “the weakest strut in the chassis of modern biology” (John Horgan), and honestly, this virtual workshop doesn’t change that status at all.

actually, I technically don't disagree with FL here. It IS the weakest area of modern biology.

...what FL misses is that considering we just saw an entire conference on it, with dozens and dozens of individual presenters talking about peer-reviewed published work, what does that say about the rest of biology, including evolution, that is 4 or 5 orders of magnitude more established already in the literature?

If an endeavor is only as strong as its weakest link, why then FL is admitting that the ToE is essentially indisputable, based on the amount of work done on it.

somehow, I think he'll entirely miss the implications, though.

shocker.

Stanton · 11 November 2010

Mike Elzinga said:
FL said: However, for me, it's always interesting to check out the professional evolutionists' efforts regarding the origin-of-life issue, and so this is a good thread. FL
It is a good thread. But no one here believes it is “always interesting” to you. Too bad you haven’t picked up on why ID/creationist snarking about good research is completely bogus. And you still haven’t been able to justify the pseudo-science of your ID heroes. So just try to learn something instead of always trying to show off. We are already totally aware of your ignorance.
FL would sooner kill and eat his own children than make an honest attempt to learn science, or anything else that is even the slightest contrary to whatever his spiritual handlers have programmed into him.

Henry J · 11 November 2010

…what FL misses

Is that having unanswered questions in one area does not invalidate the well-established answers that we already have in other areas.

Flint · 11 November 2010

FL would sooner kill and eat his own children than make an honest attempt to learn science, or anything else that is even the slightest contrary to whatever his spiritual handlers have programmed into him.

And sadly, some parents HAVE killed their own children for failure to swallow the spiritual requirements. Though I don't recall that they ate their children after killing them. Nor are the parents repentent. They killed the body to save the soul, a bargain at the price.

Ichthyic · 11 November 2010

And sadly, some parents HAVE killed their own children for failure to swallow the spiritual requirements.

and not just the children...

Asia Bibi has been sentenced to death for blasphemy.

If folks like Byers or FL got their way, in a couple of generations, this is what the US would be like too.

Mike Elzinga · 11 November 2010

Ichthyic said: Prebiotic evolution remains “the weakest strut in the chassis of modern biology” (John Horgan), and honestly, this virtual workshop doesn’t change that status at all. actually, I technically don't disagree with FL here. It IS the weakest area of modern biology. ...what FL misses is that considering we just saw an entire conference on it, with dozens and dozens of individual presenters talking about peer-reviewed published work, what does that say about the rest of biology, including evolution, that is 4 or 5 orders of magnitude more established already in the literature? If an endeavor is only as strong as its weakest link, why then FL is admitting that the ToE is essentially indisputable, based on the amount of work done on it. somehow, I think he'll entirely miss the implications, though. shocker.
I wouldn’t call it weak; I would call it one of the most challenging parts of the overall program. Just look at the equipment that had to be developed. Consider the research on thermal vents. There are billions of possible pathways to narrow down. This is a multifaceted attack on the most complicated part of evolutionary history. Back when I started out as a young researcher, I would not have imagined we would have made as much progress as we have. Much of that equipment hadn’t been invented yet. Even though we were developing new techniques that integrated computer technology with sensitive analytical instruments, I can see by looking back that we moved much faster than it felt at the time. So, no, I don’t think this is a weak link at all; just challenging. And with some really cool equipment!

Ichthyic · 11 November 2010

I wouldn’t call it weak; I would call it one of the most challenging parts of the overall program.

you say potato(e)

:)

besides my usage of "weak" was entirely relative, not an absolute descriptive statement.

FL · 11 November 2010

FL would sooner kill and eat his own children than make an honest attempt to learn science, or anything else that is even the slightest contrary to whatever his spiritual handlers have programmed into him. And sadly, some parents HAVE killed their own children for failure to swallow the spiritual requirements. and not just the children… Asia Bibi has been sentenced to death for blasphemy. If folks like Byers or FL got their way, in a couple of generations, this is what the US would be like too.

Hey guys, it's YOUR responsibility to keep this thread on topic. If all you've offering is personal attacks, you may want to take it to the Bathroom Wall. Don't act a fool in front of the Virtual Workshop professional scientists. Let's keep things "sophisticated", as John K suggested. Like Mike E agreed, this IS a good thread....but that's true only if you make the choice to keep it topical. FL

Ichthyic · 11 November 2010

Hey guys, it’s YOUR responsibility to keep this thread on topic.

because you're just an insensate puppy, pissing on the floor?

it's people like you that make me think that PT would NOT be a good place for a "coffee room" discussion regarding some conference.

while I admire Reed's efforts, the software here is not amenable to dealing with those who aren't properly housebroken.

Mike Elzinga · 11 November 2010

Ichthyic said: I wouldn’t call it weak; I would call it one of the most challenging parts of the overall program. you say potato(e) :) besides my usage of "weak" was entirely relative, not an absolute descriptive statement.
:-) Ah; Dan Quayle. Who could have guessed back then that political candidates would go downhill from there?

Ichthyic · 11 November 2010

Who could have guessed back then that political candidates would go downhill from there?

*sigh*

indeed.

well, it was one of the primary reasons I left. I could see the teabaggers coming 10 years ago.

sadly, I think it will only get worse, before it gets better.

this is so OT, but at this point, it seems anyone who had anything to say about the conference has done so.

Mike Elzinga · 11 November 2010

FL said: Hey guys, it's YOUR responsibility to keep this thread on topic. If all you've offering is personal attacks, you may want to take it to the Bathroom Wall. Don't act a fool in front of the Virtual Workshop professional scientists. Let's keep things "sophisticated", as John K suggested. Like Mike E agreed, this IS a good thread....but that's true only if you make the choice to keep it topical. FL
Accept your reputation, FL. You are supposed to have control over yourself by this stage in your life. Stop the taunting and start learning something.

Ichthyic · 11 November 2010

If all you’ve offering is personal attacks

nonsense. If it were a personal attack, I would have said YOU would sponsor death for blasphemy if you had your way (well, assuming you actually don't... do you?)

instead, I distinctly noted that it would take a couple of generations of theocratic rule before that would likely happen.

see?

Stanton · 11 November 2010

FL said:

FL would sooner kill and eat his own children than make an honest attempt to learn science, or anything else that is even the slightest contrary to whatever his spiritual handlers have programmed into him. And sadly, some parents HAVE killed their own children for failure to swallow the spiritual requirements. and not just the children… Asia Bibi has been sentenced to death for blasphemy. If folks like Byers or FL got their way, in a couple of generations, this is what the US would be like too.

Hey guys, it's YOUR responsibility to keep this thread on topic. If all you've offering is personal attacks, you may want to take it to the Bathroom Wall. Don't act a fool in front of the Virtual Workshop professional scientists. Let's keep things "sophisticated", as John K suggested. Like Mike E agreed, this IS a good thread....but that's true only if you make the choice to keep it topical. FL
Tell us again why we should take you seriously, or even that you do not deserve abuse when you happily insist on disrupting every single thread you visit with malicious lies, and deliberate slander, that you believe with your very heart and soul that Science is really an evil rival religion out to destroy Christianity, or that you've repeatedly stated that you would happily commit murder, without a second thought, if you thought that God told you to do so. Given your pathetic grasp of Science, and your persistence in behaving like a snot-nosed schoolyard bully, my statement that you would sooner kill and eat your own children than make even a feeble attempt to educate yourself about anything contrary to what your handlers programmed you to believe is truth.

Mike Elzinga · 11 November 2010

FL said: Like Mike E agreed, this IS a good thread....but that's true only if you make the choice to keep it topical. FL
Just to add to what Stanton has observed; there is nothing religious about you. Your notion of turning the other cheek is to moon people you hate - and you appear to hate a lot of people - and wag your ass. If you really had any intention of learning anything, you would have simply shut up, watched the videos, and we would have heard nothing from you. That is not what you did. My hope is that we have some good discussions about this kind of research here on PT. But, if we do, anything like what you just did would be shipped to the Bathroom Wall and you would stay there permanently.

FL · 11 November 2010

My hope is that we have some good discussions about this kind of research here on PT.

Don't merely "hope" it, Mike. DO it. Model it yourself, in your own posts, in your own tone, in your own attitude. Simply move past the tendency to indulge in personal attacks and personal hatreds, and choose to reflect the professional, ethical dialogue standards that the virtual workshop researchers (and a lot of professionals on all sides of the science and religion table) are practicing. Good coffee rooms, be they science-based, religion-based, or (like PandasThumb) a half-and-half mixture of both items, are a matter of choice, not chance. PT is clearly not a good coffee room at this time. (But that doesn't bother me, I'm here to stay anyway!). However, PT can become such a place, if it wants to be. It's just a matter of choice. FL

Loren Williams · 11 November 2010

FL said:

Prebiotic evolution remains “the weakest strut in the chassis of modern biology” (John Horgan), and honestly, this virtual workshop doesn’t change that status at all.

Hi FL, The subject of this meeting was origin of life - from the top down. So it was deliberately focused on what extant biology tells us about the origin of life, not on prebiotic chemistry per se. But we did have several talks devoted specifically to prebiotic chemistry. Nick Hud and Ram Krishnamurty both talked about the prebiotic origins of biopolymers. I am surprised to read that you think there is something weak about their science. Could you be specific? And John Horgan... Is he the guy who wrote 'The End of Science'? Could you refer us to some of his peer-reviewed papers on prebiotic chemistry? Thanks, Loren

Stanton · 11 November 2010

FL said:

My hope is that we have some good discussions about this kind of research here on PT.

Don't merely "hope" it, Mike. DO it. Model it yourself, in your own posts, in your own tone, in your own attitude. Simply move past the tendency to indulge in personal attacks and personal hatreds, and choose to reflect the professional, ethical dialogue standards that the virtual workshop researchers (and a lot of professionals on all sides of the science and religion table) are practicing. Good coffee rooms, be they science-based, religion-based, or (like PandasThumb) a half-and-half mixture of both items, are a matter of choice, not chance. PT is clearly not a good coffee room at this time. (But that doesn't bother me, I'm here to stay anyway!). However, PT can become such a place, if it wants to be. It's just a matter of choice. FL
Then how come you're the one who lies about how education in the US is improving, even though test scores are dropping due to the direct interference of Creationists? Why should we assume that you want productive discussion when you're the one slandering everyone who doesn't worship you? Why do you feel you do not deserve verbal abuse when you're the one proudly stating that he would happily commit murder if God told you so? Why do you think we should listen to what you have to say about science when you demonstrate that you know nothing about it, AND that you think science is really an evil rival religion that opposes (your bigoted version of) Christianity?

Stanton · 12 November 2010

Loren Williams said:
FL said:

Prebiotic evolution remains “the weakest strut in the chassis of modern biology” (John Horgan), and honestly, this virtual workshop doesn’t change that status at all.

Hi FL, The subject of this meeting was origin of life - from the top down. So it was deliberately focused on what extant biology tells us about the origin of life, not on prebiotic chemistry per se. But we did have several talks devoted specifically to prebiotic chemistry. Nick Hud and Ram Krishnamurty both talked about the prebiotic origins of biopolymers. I am surprised to read that you think there is something weak about their science. Could you be specific? And John Horgan... Is he the guy who wrote 'The End of Science'? Could you refer us to some of his peer-reviewed papers on prebiotic chemistry? Thanks, Loren
Be aware that FL constantly lies about how Evolution will collapse like a house of cards and dynamite simply because scientists do not yet perfectly understand Abiogenesis, or that Intelligent Design is somehow, magically, science, while Evolution is actually, magically, a religion. He also likes to say how he happily awaits the day God will descend from the Heavens to destroy all of the evidence for Evolution, and everyone who accepts Evolution, with fire, or that no True Christian, with the sole exception of the Pope, is permitted to accept Evolution as true, under pain of damnation.

Ichthyic · 12 November 2010

However, PT can become such a place, if it wants to be. It's just a matter of choice.

condescension, ignorance AND stupidity.

what a package!

Dale Husband · 12 November 2010

FL said:

My hope is that we have some good discussions about this kind of research here on PT.

Don't merely "hope" it, Mike. DO it. Model it yourself, in your own posts, in your own tone, in your own attitude. Simply move past the tendency to indulge in personal attacks and personal hatreds, and choose to reflect the professional, ethical dialogue standards that the virtual workshop researchers (and a lot of professionals on all sides of the science and religion table) are practicing. Good coffee rooms, be they science-based, religion-based, or (like PandasThumb) a half-and-half mixture of both items, are a matter of choice, not chance. PT is clearly not a good coffee room at this time. (But that doesn't bother me, I'm here to stay anyway!). However, PT can become such a place, if it wants to be. It's just a matter of choice. FL
Hey, as long as you come around here claiming that the dogmas of a 2000 year old book trump the findings of the past 150 years of empirical research, I think we have a natural right to insult you. Why? Because you simply do not have a legitimate point of view, any more than an average lunatic who thinks he's the reincarnation of Adolph Hitler or some other historical figure. When you act like a baby, you will be treated like one. Isn't that obvious?

henry · 12 November 2010

Mike Elzinga said:
Ichthyic said: I wouldn’t call it weak; I would call it one of the most challenging parts of the overall program. you say potato(e) :) besides my usage of "weak" was entirely relative, not an absolute descriptive statement.
:-) Ah; Dan Quayle. Who could have guessed back then that political candidates would go downhill from there?
Don't forget Biden's three letter word, j-o-b-s.

Rolf Aalberg · 12 November 2010

FL said: So again, much remains unanswered, and prebiotic evolution remains the weakest strut in the chassis of modern biology. Polls indicate that the majority of Americans favor intelligent design as the explanation of how life originated on Earth.

With so many comments already up about FL's derailing I suppose I may chip in too. To begin with, I can't see how yet unanswered questions in the ongoing research on OOL matters WRT 'modern biology'. As far as evolution is concerned, 150 years of research have settled the basic issues and questions. The sad state of affairs that is reflected by, if the claim is correct that

a majority of Americans favor intelligent design as the explanation

has no bearing on science. It just confirms the strength of fundamentalism in America. ID aka Goddidit doesn't explain anything; ID is the fundamentalist's last resort to avoid the frightening conclusion: You have been and are being lied to - an you want the lie to be true! The facts preempt polls.

Steve P. · 12 November 2010

Burnett just loves those taunting ways of his. I guess he hopes to deliver those ignoramuses right into Elzinga's hands, who is just salivating to line 'em up against the wall. Another dream team in the works. While he's busy tag teamin' with Elzinga, I think I will work on the third video.
Paul Burnett said: Did anybody else notice? Not one anti-evolution comment (yet) from FL or Byers or other creationist ignorami. They're probably all sitting there with their hands over their ears, singing "lalala.."

Steve P. · 12 November 2010

Mr. Hurd, If you can handle the stench, could you please advise which presentations in particular you are referring to and what points specifically devastate Meyer's argument? Thanks in advance from this ID proponent.
Gary Hurd said:
Michael J said: I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s
There were several papers that were directly, and thoroughly devastating to Steve Meyer's execrable book, "Signature in the Cell."

Stanton · 12 November 2010

Bullshitting as usual, I see. Perhaps you can explain how the videos are scientific failures because they're far too scientific and too secular, and not spiritual enough for your inane preferences? Or maybe you can show us how Intelligent Design Theory can magically explain the situation better?
Steve P. said: Burnett just loves those taunting ways of his. I guess he hopes to deliver those ignoramuses right into Elzinga's hands, who is just salivating to line 'em up against the wall. Another dream team in the works. While he's busy tag teamin' with Elzinga, I think I will work on the third video.
Paul Burnett said: Did anybody else notice? Not one anti-evolution comment (yet) from FL or Byers or other creationist ignorami. They're probably all sitting there with their hands over their ears, singing "lalala.."

Stanton · 12 November 2010

All of science devastates Meyer's pitiful "argument," especially since Meyer doesn't provide any evidence to support it, not from Intelligent Design, not from science, either.
Steve P. said: Mr. Hurd, If you can handle the stench, could you please advise which presentations in particular you are referring to and what points specifically devastate Meyer's argument? Thanks in advance from this ID proponent.
Gary Hurd said:
Michael J said: I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s
There were several papers that were directly, and thoroughly devastating to Steve Meyer's execrable book, "Signature in the Cell."

DS · 12 November 2010

Of course, no matter what evidence is presented, Steve will still claim that there isn't sufficient detail. He will demand that science explain everything to his own satisfaction and he will refuse to be satisfied no matter what. He will then go on to claim that an appeal to supernatural forces must be invoked if there is the slightest thing that cannot be fully explained by science. Of course he will refuse to apply the same rigorous criteria to his own "alternative".

Oh well. At least he might learn something by watching the videos. Unless of course he just ridicules it because he doesn't understand it and can't be bothered to actually learn anything. Well we don't have to match his pathetic level of detail. Maybe we should just demand that he show us an actual picture of the actual signature in the cell. You know, something like:

GOD DID THIS (C) 4004 BC (Patent pending, not valid in Kentucky and parts of Canada)

Loren Williams · 12 November 2010

ID is a bit outside of my field of expertise (science), but I think I once read something by Meyers or one of his colleagues about how the translation system is irreducibly complex and so could not have developed by natural selection. Since that is the focus of my research, I took notice. It is true that translation is outrageously complex, and meets all the requirements of an irreducibly complex system. Take away the large subunit or the small subunit or the mRNA or the rRNA or the ribosomal proteins or the tRNA or the ions or the amino acids or whatever and it does not work. But never-the-less, we have detailed models, discussed in the last session of the meeting (video posted soon), all supported by data, all experimentally accessible, for ribosomal origins and evolution. Koonin describes his model. Both Sternberg and Fox describe other aspects of models of ribosomal evolution, and so do I. All of us have published in this area (Wolf and Koonin, 2009; Fox, 2004; Bokov and Steinberg 2009, Hsiao and Williams 2009). Just by way of example, evidence for exaptation of the small subunit is overwhelming, and is accepted by everyone, as far as I know. Over the next years these models will be refined and extended (or in some cases discarded).

fnxtr · 12 November 2010

"ID is a bit outside of my field of expertise (science)..."

Beautiful. :-)

DS · 12 November 2010

Loren,

Thanks for the information. Your research sounds fascinating. Perhaps you could post some references on the exaptation of the small ribosomal subunit if you have the time.

As for "everyone" accepting something, this is contrary to any experience with creationists. There is even one guy who denied that dolphin embryos have hind limbs while looking at a picture of them!

John Kwok · 12 November 2010

It might have been best if you hadn't showed up FL. I suggest you adhere to Mike Elzinga's advice; "Accept your reputation, FL. You are supposed to have control over yourself by this stage in your life. Stop the taunting and start learning something.". I also suggest you listen to what Loren said too:
FL said:

FL would sooner kill and eat his own children than make an honest attempt to learn science, or anything else that is even the slightest contrary to whatever his spiritual handlers have programmed into him. And sadly, some parents HAVE killed their own children for failure to swallow the spiritual requirements. and not just the children… Asia Bibi has been sentenced to death for blasphemy. If folks like Byers or FL got their way, in a couple of generations, this is what the US would be like too.

Hey guys, it's YOUR responsibility to keep this thread on topic. If all you've offering is personal attacks, you may want to take it to the Bathroom Wall. Don't act a fool in front of the Virtual Workshop professional scientists. Let's keep things "sophisticated", as John K suggested. Like Mike E agreed, this IS a good thread....but that's true only if you make the choice to keep it topical. FL

John Kwok · 12 November 2010

I'm not familiar with much of this science Steve P., but the very titles should have suggested that virtually all of the papers refuted a lot of Meyer's risible, simplistic, and often illogical, thinking with respect to the origin of life. One of the speakers, Loren Williams, has stopped by here to give insightful commentary on what was said:
Steve P. said: Mr. Hurd, If you can handle the stench, could you please advise which presentations in particular you are referring to and what points specifically devastate Meyer's argument? Thanks in advance from this ID proponent.
Gary Hurd said:
Michael J said: I'll bet none of the "Greats" from ID turned up to listen. They base all of their information based on papers from the '70s
There were several papers that were directly, and thoroughly devastating to Steve Meyer's execrable book, "Signature in the Cell."
i am willing to bet that your Taiwanese colleagues know a lot more science than you do, and that they recognize that Intelligent Design cretinism is noting more than religiously-derived pseudoscientific mendacious intellectual pornography.

Mike Elzinga · 12 November 2010

Steve P. said: Burnett just loves those taunting ways of his. I guess he hopes to deliver those ignoramuses right into Elzinga's hands, who is just salivating to line 'em up against the wall. Another dream team in the works. While he's busy tag teamin' with Elzinga, I think I will work on the third video.
Well, both you and FL have built up quite a backlog of ID science you have refused to defend or explain. You have chosen to infest a thread in which the foundations of ID are under the gun. Now is your chance to explain how ID is consistent with the research going in this conference. In particular, as an expert on ID/creationism, you must certainly know the roots if the “calculations” by Dembski, Meyer, et. al. Surely you are aware of Henry Morris’s central narrative which forms the foundation for Dembski’s and Meyer’s works. And how could you miss the peer-reviewed paper of Dembski and Marks. Surely you can explain how the mathematical foundation of all of ID fails to explains the yields of chemical compounds in the experiments discussed in this conference. But you and FL have refused to explain these “theoretical calculations” and the justification for the sampling assumptions made in this paper. The same assumptions are the foundation of Meyer’s claims also. So let’s hear your explanation of this foundational narrative of ID/creationism. And now you also have another major work of a creationist, namely, Jason Lisle’s use of "relativity" to solve the “distant starlight problem” and clear a path for a universe that is only 6000 years old. Now that directly conflicts with the ages when the various chemicals leading to the formation of life were formed. So you also owe us an explanation of Lisle’s paper. How does Lisle justify his use of relativity given the assumptions he lays out in his paper? You don’t like being lined up against the wall? Then show yourself capable of understanding the “science” of ID/creationism and justify it like a grownup. The same goes for FL. Or are you just going to continue to taunt and fake it; and then run away when asked to justify something specific? Are both of you so stupid that you think we can’t see the games you play? Now get cracking on those explanations!

John Kwok · 12 November 2010

Again you get a ringing endorsement from me Mike but I think Steve P. is so intellectually-challenged that he is incaable of discerning that Intelligent Design cretinism is nothing more than religiously-derived pseudoscientific mendacious intellectual pornography. I believe his Taiwanese colleagues in the textiles trade probably have far more understanding as to what is valid science and whether one could make plausible, testable, hypotheses from Intelligent Design "principles" and demonstate that yes, indeed, Intelligent Design is a better, more comprehensive, alternative to modern evolutionary theory in explaining the origin, history and current composition of Planet Earth's biodiversity. I would venture to guess that they might do a more credible job of doing just that - while also demonstrating that Intelligent Design cretinism is irrational rubbish - than what we have seen from the likes of Behe, Dembski, Marks, Meyer, Minnich, Sternberg and Wells:
Mike Elzinga said:
Steve P. said: Burnett just loves those taunting ways of his. I guess he hopes to deliver those ignoramuses right into Elzinga's hands, who is just salivating to line 'em up against the wall. Another dream team in the works. While he's busy tag teamin' with Elzinga, I think I will work on the third video.
Well, both you and FL have built up quite a backlog of ID science you have refused to defend or explain. You have chosen to infest a thread in which the foundations of ID are under the gun. Now is your chance to explain how ID is consistent with the research going in this conference. In particular, as an expert on ID/creationism, you must certainly know the roots if the “calculations” by Dembski, Meyer, et. al. Surely you are aware of Henry Morris’s central narrative which forms the foundation for Dembski’s and Meyer’s works. And how could you miss the peer-reviewed paper of Dembski and Marks. Surely you can explain how the mathematical foundation of all of ID fails to explains the yields of chemical compounds in the experiments discussed in this conference. But you and FL have refused to explain these “theoretical calculations” and the justification for the sampling assumptions made in this paper. The same assumptions are the foundation of Meyer’s claims also. So let’s hear your explanation of this foundational narrative of ID/creationism. And now you also have another major work of a creationist, namely, Jason Lisle’s use of "relativity" to solve the “distant starlight problem” and clear a path for a universe that is only 6000 years old. Now that directly conflicts with the ages when the various chemicals leading to the formation of life were formed. So you also owe us an explanation of Lisle’s paper. How does Lisle justify his use of relativity given the assumptions he lays out in his paper? You don’t like being lined up against the wall? Then show yourself capable of understanding the “science” of ID/creationism and justify it like a grownup. The same goes for FL. Or are you just going to continue to taunt and fake it; and then run away when asked to justify something specific? Are both of you so stupid that you think we can’t see the games you play? Now get cracking on those explanations!

Mike Elzinga · 12 November 2010

DS said: Of course, no matter what evidence is presented, Steve will still claim that there isn't sufficient detail. He will demand that science explain everything to his own satisfaction and he will refuse to be satisfied no matter what. He will then go on to claim that an appeal to supernatural forces must be invoked if there is the slightest thing that cannot be fully explained by science. Of course he will refuse to apply the same rigorous criteria to his own "alternative".
I would suggest we keep demanding that FL and Steve P – and any other such troll, for that matter – explain the foundations of ID/creationism. There is absolutely no excuse for camp followers of ID/creationism, such as these two, to be ignorant of the “scientific” foundations of their beloved “discipline.” There is a well-defined conceptual thread that leads to the kinds of assumptions and calculations that permeate the work of Dembski, Wells, Behe, Meyer, et. al.. If FL or Steve P, as adoring fans of ID/creationism, cannot begin to understand the “science” of their heroes – and in the face of the fact that many of us in the real scientific community do understand it better than their experts do – then there is plenty of justification to continue rubbing their noses in it until they are raw. In an ironic kind of way, it is like slaughtering the platoons led by stupid junior officers who send their troops into battle with no ammunition. If the “casualties” become “gruesome” enough, maybe the troops will mutiny and start taking a harder look at the buffoons who send them to their “death.” FL and Steve P are already dead; they just plod on like zombies. But maybe some camp followers with a little more intelligence will wake up and start learning some real science someday.

FL · 12 November 2010

Hi FL, The subject of this meeting was origin of life - from the top down. So it was deliberately focused on what extant biology tells us about the origin of life, not on prebiotic chemistry per se. But we did have several talks devoted specifically to prebiotic chemistry.

Hello sir! That's true--I gathered the same from reading your abstract and all the other available abstracts as well.

Nick Hud and Ram Krishnamurty both talked about the prebiotic origins of biopolymers. I am surprised to read that you think there is something weak about their science.

Well, I did not specifically criticize their papers nor their scientific efforts therein. However, I have no trouble affirming that the phrase I borrowed from Steve Freeland's abstract...

"...much remains unanswered"

...is an accurate and accepted assessment that describes and permeates the entire overall state of OOL research at this time. Neither Hud and Krishmamurty's essays, nor any of the other good articles in your virtual workshop, are going to overturn that assessment at this time. And that's also true for the "weakest strut" assessment given by SciAm's John Horgan as well. It's not a slap at individual scientists and their research articles, it's just the way things are, overall, right now. For example, as previously stated, after you extract every possible insight or direction from Eugene Koonin's article, the reality is that the origin of the genetic code is STILL "a wide open problem", to use his phrase. That doesn't mean Koonin's article is no good or bad science; it just means that the GC's origin remains unsolved a wide open problem, period. That's just being honest, that's all. ***

And John Horgan… Is he the guy who wrote ‘The End of Science’? Could you refer us to some of his peer-reviewed papers on prebiotic chemistry?

Yes, SciAm's John Horgan wrote that book. Interesting book, of course. However, Horgan's right on the "weakest strut" thing. Doesn't need to publish a technical prebiotic chem-paper to prove it, either--it's clear and accepted enough. Horgan's not a creationist, and he's not the only one who's pointed it out. Rememember Klaus Dose's 1988 statement in Interdisciplinary Science Reviews?

"More than 30 years of experimentation on the origin of life in the fields of chemical and molecular evolution have led to a better perception of the immensity of the problem of the origin of life on Earth rather than to its solution."

That doesn't mean you're and the other Workshop participants aren't doing good science in your articles--indeed you are, AFAIK. However....

Through the week of the (ISSOL 2009) conference, we noted an air of frustration and pessimism, even a hint of despair or desperation. The realization seems to have dawned that 45 years of research into the origins of life has led to a dead end. The same old intractable problems—if not more—still exist, with no resolution in sight. Dr. Fazale Rana, chemist, Reasons to Believe website (Hugh Ross)

So, again, it's not about disrespecting the science you're trying to do. It's about being clear and realistic (and honest) with the overall situation that's currently on the science table. FL

DS · 12 November 2010

I think that we can all agree as rational beings that "much remains unanswered" is far superior to "no clear hypothesis exists yet, let alone any way to test it or any evidence to support it".

The old routine of "you don't know everything, so I don't have to believe anything you say" is wearing a little thin after all these years now isn't it? Exactly when will there be enough evidence that creationists can't explain for them to concede that science provides a better answer? IMHO we passed that point about fifty years ago and ignorance is the only refuge left for such scoundrels.

Mike Elzinga · 12 November 2010

FL said: However, I have no trouble affirming that the phrase I borrowed from Steve Freeland's abstract...

"...much remains unanswered"

...is an accurate and accepted assessment that describes and permeates the entire overall state of OOL research at this time.
How nice of you to remind us of how often you have run away from your detailed, concept-by-concept explanation of the Dembski and Marks paper. Indeed; you have much to explain.

Neither Hud and Krishmamurty's essays, nor any of the other good articles in your virtual workshop, are going to overturn that assessment at this time.

And your basis for this statement is…? Does this come from your deep understanding of ID/creationism; or are you just bluffing again? You still haven’t explained the “science” of ID/creationism that allows you to make such pronouncements.

And that's also true for the "weakest strut" assessment given by SciAm's John Horgan as well. It's not a slap at individual scientists and their research articles, it's just the way things are, overall, right now.

Why do you claim this is the “weakest strut” of the research on the evolution of life? You display no apparent understanding of the level of work going on in these papers. You make that claim based on your “understanding” of people you quote without the ability to critically evaluate their claim. Do you derive that “understanding” from your deep conceptual level of understanding of ID/creationism? If so, why can’t you even begin to explain a peer-reviewed paper by Dembski and Marks?

For example, as previously stated, after you extract every possible insight or direction from Eugene Koonin's article, the reality is that the origin of the genetic code is STILL "a wide open problem", to use his phrase. That doesn't mean Koonin's article is no good or bad science; it just means that the GC's origin remains unsolved a wide open problem, period. That's just being honest, that's all.

How does such an inane statement show you have any understanding of the science? This is called bluffing. You make an inane statement that makes it appear that you grasp what is going on. But you never get into specifics; not even with your beloved pseudo-science of ID/creationism. You are all bluff and bluster.

Through the week of the (ISSOL 2009) conference, we noted an air of frustration and pessimism, even a hint of despair or desperation. The realization seems to have dawned that 45 years of research into the origins of life has led to a dead end. The same old intractable problems—if not more—still exist, with no resolution in sight. Dr. Fazale Rana, chemist, Reasons to Believe website (Hugh Ross)

So, again, it's not about disrespecting the science you're trying to do. It's about being clear and realistic (and honest) with the overall situation that's currently on the science table. FL This is just gratuitous condescension! You have no clue about what is being done or the significance of these studies. You still have to explain why the program of “research” in ID/creationism has made more progress and why it has anything to do with real science.

FL · 12 November 2010

Mike: if you disagree with Horgan's assessment, go ahead and publish that OOL paper in which you spell out, scientifically and specifically, the origin of the genetic code (the issue mentioned by Koonin.)

Free Nobel Prize and "Today Show" appearances, of course. Please publish it now. Thanks!

FL :)

FL · 12 November 2010

And btw, there is NO condescension towards any of the Workshop researchers, including the one who was kind enough to ask me his question.

Those folks, I respect. Can't really say that about some PT posters, though. (U know who U are, heh!).

Mike Elzinga · 12 November 2010

FL said: And btw, there is NO condescension towards any of the Workshop researchers, including the one who was kind enough to ask me his question. Those folks, I respect. Can't really say that about some PT posters, though. (U know who U are, heh!).
And we know what you are. And by the time we get done here, so will they. You can’t run away now. So let’s get down to work here. Start simple. Take the fundamental sampling assumptions from Dembski and Marks paper and show us how those assumptions allow one to calculate the yields of the compounds produced in several of those papers on line. Pick any of the papers that show the percentage yields. Can you do that? Can you explain why Dembski and Marks are allowed to claim that the chemistry and physics of molecules behave the way their sampling assumptions suggest?

Flint · 12 November 2010

So, again, it’s not about disrespecting the science you’re trying to do. It’s about being clear and realistic (and honest) with the overall situation that’s currently on the science table.

I dispute that this assessment is honest. To me, it sounds very much like a tobacco industry representative denying ANY POSSIBLE connection between smoking and lung cancer, on the grounds that the exact causal sequence has not been demonstrated at the molecular or atomic level. Yet another subtle implication that if we don't know everything, we don't know anything. And he calls this "honest". Well, based on all he's said, I seriously doubt if he really has any concept of honesty. To him, it's just another meaningless buzzword to apply to the latest misrepresentation.

Loren Williams · 12 November 2010

Dear Y'all,
Marco has just reported that all of the the talks from the meeting are now posted.

http://astrobiology.nasa.gov/nai/ool-www/program/

Cheers,
Loren

Mike Elzinga · 12 November 2010

FL said: And btw,there is NO condescension towards any of the Workshop researchers, including the one who was kind enough to ask me his question. Those folks, I respect. Can't really say that about some PT posters, though. (U know who U are, heh!).
And by the way, regarding my last post; in case you have forgotten that there is a fundamental conceptual thread running through all of the works of the ID/creationists, here is David L. Abel’s “spontaneous molecular chaos” paper. If you want to dig into Meyer’s work, we can do that too. But the same assumptions are there also. According to one of the central themes of ID/creationism, it’s all “spontaneous molecular chaos” down there (Abel’s term). You get the idea. But this is the problem, isn’t it? You want to claim abiogenesis cannot happen partly because progress has been slower than you think it should; and also because, according to the fundamental assumptions of ID/creationism, it can’t happen. But that is just what you can prove to us right here in front of the entire world and with these papers and videos available for all to see. What better opportunity for a grand fan of ID/creationism to shine.

Mike Elzinga · 12 November 2010

Loren Williams said: Dear Y'all, Marco has just reported that all of the the talks from the meeting are now posted. http://astrobiology.nasa.gov/nai/ool-www/program/ Cheers, Loren
YEA! Thank you!

FL · 12 November 2010

Mike: if you disagree with Horgan’s assessment, go ahead and publish that OOL paper in which you spell out, scientifically and specifically, the origin of the genetic code (the issue mentioned by Koonin.)

Do you disagree with John Horgan's assessment, Mike? If not, please say so. If you do, then the above request is still on the table: you could at least sketch out your solution to that huge longstanding problem, right here in this forum, and then publish the whole thing in a peer review journal. Fair enough? FL

Gary Hurd · 12 November 2010

Well, regarding "Signature in the Cell" I would rather first point out some of the things that most irritated me. From about page 223 to 226, we have a cut n' paste with trivial alterations form an 1998 article Meyer wrote, “DNA by Design,” published in the prestigious biological journal “Journal of Rhetoric & Public Affairs.” Text from “DNA by Design” appears quite often in “Signature.” The most irritating feature is that in ten years between the early text and “Signature,” Meyer had not even bothered to update critical references. Most obvious was that in both publications, a footnote #10-21 appears with nearly identical citations as the 1998 article. I’ll quote it below, because if illustrates another problem with Meyer’s so-called scholarship.
(from Meyer 1998, which appeared with trivail alteration as footnote 10-15 in Meyer 2009) 21. L. C. Berkner and L. L. Marshall, “On the Origin and Rise in Concentration in the Earth’s Atmosphere,” Journal of Atmospheric Science 22 (1965): 225-61; R. T. Brinkman, “Dissociation of Water Vapor and Evolution of Oxygen in the Terrestrial Atmosphere,” Journal of Geophysical Research 74 (1969): 5354-68; Erich Dimroth and Michael M. Kimberly, “Pre-Cambrian Atmospheric Oxygen: Evidence in Sedimentary Distribution of Carbon Sulfur, Uranium and Iron,” Canadian Journal of Earth Sciences 13 (1976): 1161-85; J. H. Carver, “Prebiotic Atmospheric Oxygen Levels,” Nature 292 (1981): 136-38; H. D. Holland, B. Lazar, and M. McCaffrey, “Evolution of Atmosphere and Oceans,” Nature 320 (1986): 27-33; J. F. Kastings, S. C. Liu, and T. M. Donahue, “Oxygen Levels in the Prebiological Atmosphere,” Journal of Geophysical Research 84 (1979): 3097-3102; Kerr, “Origin of Life: New Ingredients Suggested,” 42-43; Thaxton et al., Mystery of Life’s Origin, 73-94.
How did this vary in Meyer’s “Signature?” Well, the publication dates, and journal data were all removed to a bibliography. But aside from formatting, Meyer added a two additional out dated references, Towe (1996), and Kasting (1993). What did Meyer use this group of citations to support? That the late-Hadean, early-Archean has an oxygenated atmosphere, and that without “intelligent intervention,” which in IDC speak means “goddidit,” all chemical reactions on the primitive Earth result in “biologically irrelevant compounds-chemically insoluble sludge.” (Meyer 2010, pg 226). Meyer, in 1998, might have been justified in thinking that scientific opinion was divided among geochemists regarding the Earth's early redox state. After all he is not really a geologist, nor a chemist. But, his under-graduate degree was form a religious school in geology, and his continued ignorance was not justified in 2008. Publications, several by the very people Meyer has cited, since 1998 have conclusively made the case for a late-Hadean / early-Archean reduced atmosphere, or at most a neutral atmosphere with strongly reducing oasis. Even articles readily available prior to 2008 make this obvious, and subsequent research has “capped” the argument. (For example, Catling, David C., Kevin J. Zahnle, Christopher P. McKay 2002 “Reply to Towe (2002)” Science letters v.295 (5559):1419a Genda, Hidenori & Abe, Yutaka 2003 “Survival of a proto-atmosphere through the stage of giant impacts: the mechanical aspects” Icarus 164, 149-162 (2003). Holland, Heinrich D. 1999 “When did the Earth’s atmosphere become oxic? A Reply.” The Geochemical News #100: 20-22 (see Ohmoto 1997 ) Ricardo, A., Carrigan, M. A., Olcott, A. N., Benner, S. A. 2004 "Borate Minerals Stabilize Ribose" Science January 9; 303: 196 (in Brevia) Tian, Feng , Owen B. Toon, Alexander A. Pavlov, and H. De Sterck 2005 "A Hydrogen-Rich Early Earth Atmosphere" Science 13 May; 308: 1014-1017; published online 7 April 2005 E. T. Wolf and O. B. Toon 2010 “Fractal Organic Hazes Provided an Ultraviolet Shield for Early Earth” Science 4 June 328: 1266-1268 [DOI: 10.1126/science.1183260] (in Reports). Read their references for background) And, as I mentioned above, the late Stanley Miller’s last publication, Cleaves, H. James, John H. Chalmers, Antonio Lazcano, Stanley L. Miller, Jeffrey L. Bada 2008 “A Reassessment of Prebiotic Organic Synthesis in Neutral Planetary Atmospheres” Orig Life Evol Biosph (2008) 38:105–115 makes the redox issue moot, and was published in plenty of time to have been included in Meyer’s thinking- if only he had been thinking.

Gary Hurd · 12 November 2010

Loren Williams said: Dear Y'all, Marco has just reported that all of the the talks from the meeting are now posted. http://astrobiology.nasa.gov/nai/ool-www/program/ Cheers, Loren
Thanks for the up-date

Stanton · 12 November 2010

FL said:

Mike: if you disagree with Horgan’s assessment, go ahead and publish that OOL paper in which you spell out, scientifically and specifically, the origin of the genetic code (the issue mentioned by Koonin.)

Do you disagree with John Horgan's assessment, Mike? If not, please say so. If you do, then the above request is still on the table: you could at least sketch out your solution to that huge longstanding problem, right here in this forum, and then publish the whole thing in a peer review journal. Fair enough? FL
So explain to us how Intelligent Design is supposed to be science better than Evolutionary Biology, even though the only thing anyone in Intelligent Design is allowed to say is that "Evolution doesn't work because GODDESIGNERDIDIT"? I distinctly remember you claiming that you had a "three plank" explanation of how Intelligent Design is supposed to be science, and not Creationism dressed up in a cheap labcoat. I also distinctly remember you never ever ever getting around to talking about the specific details of your "three plank" explanation. You once boasted of having explained these legendary details, but you never got around to providing the URL to them.

Gary Hurd · 12 November 2010

I noticed that talks are not avialble from;

4:20 pm – 4:40 pm EST
Making Sense of Life’s Amino Acid Alphabet
Steve Freeland
University of Hawaii

1:25 pm – 1:50 pm EST
Extracellular Polymeric Substances As Armor Against Cytotoxic Minerals
Nita Sahai
University of Wisconsin, Madison

Idle curiosity: Why not?

Mike Elzinga · 12 November 2010

FL said:

Mike: if you disagree with Horgan’s assessment, go ahead and publish that OOL paper in which you spell out, scientifically and specifically, the origin of the genetic code (the issue mentioned by Koonin.)

Do you disagree with John Horgan's assessment, Mike? If not, please say so. If you do, then the above request is still on the table: you could at least sketch out your solution to that huge longstanding problem, right here in this forum, and then publish the whole thing in a peer review journal. Fair enough? FL
I don’t give a CRAP about Horgan’s “assessment. It’s irrelevant to what is taking place here. The point is what do YOU understand? Instead of quoting other people’s “opinions,” why can’t you demonstrate that you have any conceptual understanding of your own pseudo-science; let alone any understanding whatsoever of real science. Until you can demonstrate that, there are plenty of reasons for us here to believe you have no comprehension of all the crap you so glibly toss around on these threads as you pretend to “be in the game.” You are NOT in the game until you can show some comprehension of the conceptual themes that run through the pseudo-science you champion. Most of us here know more about your ID/creationism than you or your leaders do. We don’t have to engage in quote wars. We know enough to be able to think on our own. You can’t do that. So far, all you have been able to do is dance around playing word games and making inane comments that say NOTHING and reveal nothing about what concepts you understand. That may be the way you pump yourself up in front of your cohorts; but that is not going to get you any points here. Now get back to those concepts in those papers and start answering those questions I asked.

Gary Hurd · 12 November 2010

Why do any of you waste time with trolls?

If you stop feeding them, they will go away.

harold · 12 November 2010

Steve P. -

Glad to see you're here. I have some questions.

Who designed what? How? When? Evidence-based answers that can be independently replicated, please.

I notice that you never answer these questions.

Loren Williams · 12 November 2010

Hi Y'all,
There has been some discussion here about the nature and the origin of the genetic code. Steve Freeland said in his really beautiful talk that the genetic code is an open question. He has been quoted repeatedly on that. But Steve did not mean that the origin of the genetic code is an undispherable mystery and that no models have been proposed for it. There are two general models for the origin of the genetic code. The first model is that direct favorable interactions between specific amino acids and certain nucleic acid sequences evolved into the genetic code. Michael Yarus, a brillant biochemist at the University of Colarado has championed this model. The second model, which I think is more reasonable, is a 'frozen accident', whereby a chemical reaction between two charged RNAs is accelerated by a third RNA that never interacts directly with the amino acids. Both of these models make specific testable predictions. The fact that these two models have not been resolved as of this time to everyone's satisfation does not make origin of life research a 'weak strut'. This is just science, this is how it always works. If there is interest, maybe I can get Steve on the line. I doubt that somebody like John Horgan, with expertise in journalism, knows enough about this on a level that would allow him to understand the validity of these models.
Thanks,
Loren

FL · 12 November 2010

I don’t give a CRAP about Horgan’s "assessment". It’s irrelevant to what is taking place here.

Not correct, Mike. SciAm's John Horgan's long-standing assessment of the state of prebiotic evolution, is directly OOL related and OOL relevant, unlike your attempt to derail this thread by opening a separate discussion of Dembski & Mark's journal-published, peer-reviewed paper. Whether you agree or disagree with his assessment, Horgan's statement IS topical, especially since reflections or echoes of Horgan's statement can be (and have already been) specifically pointed out within two of the Virtual Workshop researchers' abstracts. If you now wish to discuss a previous thread topic, namely Dembski's 1999 IVP book Intelligent Design and specifically how Dembski's 3-point hypothesis bridged science and theology, (that's the thread where you brought up the Dembski/Marks paper and was informed that the paper doesn't say anything about bridging science and theology), that issue must be discussed in a separate thread. Please don't derail this thread, Mike. This one is about OOL and the Virtual Workshop. FL

harold · 12 November 2010

Gary Hurd -

No, actually, I find that they go away when they are consistently asked for positive evidence for "intelligent design". Not that I particularly care about making them go away. The moderators can exclude whomever they like. They can outright block people or send comments to the bathroom wall. As a mere visitor I accept their choices.

In the early days of the internet, the term "troll" referred to people who had little interest in the topic at hand, but for attention-seeking or other psychological reasons, sought to disrupt conversations. Naturally, these types of trolls would indeed go away if ignored.

The term "troll" has expanded or changed in meaning, and now generally refer to those who comment from a biased perspective, often one of denial, often using overt rudeness, and nearly always using either a fake "folksy" tone or the now less-popular hyper-pompous William F. Buckley imitation tone.

The term "troll" thus now refers to a different group of people. The objective of this new type of troll is not to disrupt, but to reinforce their own denial. Some challenge to their biases makes them uncomfortable, and they react to the cognitive dissonance by finding a forum where that challenge is discussed, where they then parrot propaganda sound bites. If ignored, they will hang around making fatuous "sarcastic" remarks to reinforce their own challenged biases; if ignored long enough timid followers will come out of the woodwork and begin "cheering them on". If allowed to define the conversation and avoid direct scientific questions (for example, if someone gets into an "I know more about Biblical prophesies than you do" battle with them) they will triumphantly go on for massive amounts of time.

However, if they are asked who designed what, when, and how, they usually run away.

harold · 12 November 2010

Steve P. and FL -

Since you guys are both cDesignproponentists, I'd like to ask you BOTH the same same questions.

I'm looking for evidence-based replies that I can independently and objectively verify.

Who designed what? When? How?

Gary Hurd · 12 November 2010

Loren Williams said: Hi Y'all, There has been some discussion here about the nature and the origin of the genetic code. Steve Freeland said in his really beautiful talk that the genetic code is an open question. He has been quoted repeatedly on that. But Steve did not mean that the origin of the genetic code is an undispherable mystery and that no models have been proposed for it.
I hope that Freeland's talk will be up on the NAI website soon. It is one of two not available.
Loren Williams said:There are two general models for the origin of the genetic code. The first model is that direct favorable interactions between specific amino acids and certain nucleic acid sequences evolved into the genetic code. Michael Yarus, a brillant biochemist at the University of Colarado has championed this model. The second model, which I think is more reasonable, is a 'frozen accident', whereby a chemical reaction between two charged RNAs is accelerated by a third RNA that never interacts directly with the amino acids. Both of these models make specific testable predictions. The fact that these two models have not been resolved as of this time to everyone's satisfation does not make origin of life research a 'weak strut'. This is just science, this is how it always works. If there is interest, maybe I can get Steve on the line. I doubt that somebody like John Horgan, with expertise in journalism, knows enough about this on a level that would allow him to understand the validity of these models. Thanks, Loren
I have to admit I am partial to Trifonov, Edward N. 2004 "The Triplet Code From First Principles" Journal of Biomolecular Structure & Dynamics, ISSN 0739-1102 Volume 22, Issue Number 1, (2004) He starts with a restricted set of AAs, and just a couplet code. I am sure you are familiar with it, so what am I missing?

Stanton · 12 November 2010

FL said:

I don’t give a CRAP about Horgan’s "assessment". It’s irrelevant to what is taking place here.

Not correct, Mike. SciAm's John Horgan's long-standing assessment of the state of prebiotic evolution, is directly OOL related and OOL relevant, unlike your attempt to derail this thread by opening a separate discussion of Dembski & Mark's journal-published, peer-reviewed paper.
Bullshit, FL. So, please explain to us, in fine detail, exactly how John Horgan pronounces the deathknell for Abiogenesis, AND please explain to us, in fine detail, exactly why no one in Abiogenesis has taken Horgan's fatal pronouncements seriously. I know it's really because you're lying about Horgan claiming that Evolution is dead because we don't understand Abiogenesis yet. And you're just whining because we aren't taking your latest baldfaced lie seriously, while we're also taking you to task for previous bouts of boastful bullshitting.
Whether you agree or disagree with his assessment, Horgan's statement IS topical, especially since reflections or echoes of Horgan's statement can be (and have already been) specifically pointed out within two of the Virtual Workshop researchers' abstracts.
So explain how Horgan's statement is topical. Oh, wait, you can't, because you're just lying, and whining that you're being taken to task because you're irritating people with your lying.
If you now wish to discuss a previous thread topic, namely Dembski's 1999 IVP book Intelligent Design and specifically how Dembski's 3-point hypothesis bridged science and theology, (that's the thread where you brought up the Dembski/Marks paper and was informed that the paper doesn't say anything about bridging science and theology), that issue must be discussed in a separate thread.
In other words, you're stating that you really would prefer to murder your own children, and eat their roasted carcasses than be forced to explain yourself.
Please don't derail this thread, Mike. This one is about OOL and the Virtual Workshop. FL
And yet, you're the one who derailed it in the first place with your lies, and then derailed in the second place with your whining lies about how your lies are magically on topic, all while refusing to actually explain how your obviously false boasts are supposed to be on topic.

Mike Elzinga · 12 November 2010

FL said: Please don't derail this thread, Mike. This one is about OOL and the Virtual Workshop. FL
We can chalk your last comment up as further evidence that you have no clue what you are talking about. We're getting there. Whether you like it or not, the rest of the scientific community gets the picture. You don't get to decide; remember? You simply don't know what is relevant and what is not.

John Kwok · 12 November 2010

Can you do a better job than Mikey Behe, Bill Dembski, Stephen Meyer, Scott Minnich, or Jon "I Love Reverend Moon" Wells have done in explaining how Intelligent Design cretinism is a better, more plausible, more predictive, alternative to modern evolutionary theory in explaining the origin, history and current composition of Planet Earth's biodiversity. I asked this very question of Behe and Dembski and neither one could provide an answer. So can you do better than a "distingished" Dishonesty Institute mendacious intellectual pornographer like Behe or Dembski? Can't wait to read your response.

BTW I still think this discussion should be at a sophisticated level, so show us the science FL which demonstrates why ID is a better scientific theory or just shut the F**K up please:

John Kwok · 12 November 2010

Agreed and I just issued FL a challenge to put up or shut up. Tell us how ID cretinism is a better scientific theory than well-established mainstream scientific theories like the Modern Synthetic Theory of Evolution. Can't wait to read his response:
Mike Elzinga said:
FL said: Please don't derail this thread, Mike. This one is about OOL and the Virtual Workshop. FL
We can chalk your last comment up as further evidence that you have no clue what you are talking about. We're getting there. Whether you like it or not, the rest of the scientific community gets the picture. You don't get to decide; remember? You simply don't know what is relevant and what is not.

John Kwok · 12 November 2010

This has absolutely nothing to do with science. Even devout scientists like Ken Miller and Vatican Astronomer - and Jesuit Brother - Guy Consolmagno recognize that you can't "bridge" science and theology. Even an eminent physicist like Lisa Randall recognizes that science and theology are different ways of knowing:
FL said: If you now wish to discuss a previous thread topic, namely Dembski's 1999 IVP book Intelligent Design and specifically how Dembski's 3-point hypothesis bridged science and theology, (that's the thread where you brought up the Dembski/Marks paper and was informed that the paper doesn't say anything about bridging science and theology), that issue must be discussed in a separate thread.
Using the same ill-informed, irrational logic demonstrated time and again by Behe, Dembski, Marks, Meyer and Wells, I have shown conclusively that there is more proof for Klingon Cosmology than there is for Intelligent Design cretinism. Indeed there's far more proof that Klingons are real than there ever will be for irreducible complexity, complex specified information or the Explanatory Filter.

John Vanko · 12 November 2010

harold said: ...(for example, if someone gets into an "I know more about Biblical prophesies than you do" battle with them) they will triumphantly go on for massive amounts of time. However, if they are asked who designed what, when, and how, they usually run away.
I think you're speaking about someone like IBIG? He's an example of exactly what you're describing. Except, of course, he knew less about the Bible than posters like Dave Luckett and eddie. IBIG went on until he clogged the Bathroom with his effluent. Enough of that. Knowing both biology and statistics, what's your impression of this on-line conference about the Origin Of Life? How much progress have you seen on OOL in your career?

harold · 12 November 2010

John Vanko -

My impression is that OOL models are developing a lot faster than I would have expected a few years ago, but that there is still plenty of opportunity in the field.

I'm an interested amateur.

One area of great interest to me, that will have to be addressed before any strong model of origin of cells is exists, is membranes, and the origin of ionic pumps and channels. The defining characteristic of contemporary independent cellular life, as opposed to molecules replicating in solution, is that the cell is a membrane enclosed environment, and ionic concentrations of the intracellular fluid are quite different from those of the extracellular fluid. All motility/contractability of cells that I am aware of ultimately depends on this, for example. I'm not a microbiologist but I know that this is characteristic of prokaryotes as well as eukaryotes.

Current cellular membranes are very coordinated with everything else about the cell, and "bubble" models may be a starting point but don't go all that far.

It's my impression that a lot more satisfying work has been done on replicators than on the organized membranes that eventually have to enclose the replicators.

I could be wrong out of pure ignorance, and would be delighted to be corrected by being directed to more membrane-origin research.

Paul Burnett · 12 November 2010

FL lied: re: Dembski & Mark's journal-published, peer-reviewed paper.
It wasn't "peer-reviewed" and it wasn't a "journal" - it was a summary article of a presentation D&M made at an electrical engineering (?) symposium. And the article - not really a "paper" - doesn't even have the term "intelligent design" in it. I know I've mentioned this several times, and others have also. Stop repeating this creationist lie. Please.

Mike Elzinga · 12 November 2010

Paul Burnett said:
FL lied: re: Dembski & Mark's journal-published, peer-reviewed paper.
It wasn't "peer-reviewed" and it wasn't a "journal" - it was a summary article of a presentation D&M made at an electrical engineering (?) symposium. And the article - not really a "paper" - doesn't even have the term "intelligent design" in it. I know I've mentioned this several times, and others have also. Stop repeating this creationist lie. Please.
There are two; the one you refer to and the one I have been referring to. I’ve been trying to go for the published one. It’s more “special” to ID/creationists.

Ichthyic · 12 November 2010

It’s more “special” to ID/creationists.

by special, do you mean ala "short bus"?

Loren Williams · 12 November 2010

I have to admit I am partial to Trifonov, Edward N. 2004 "The Triplet Code From First Principles" Journal of Biomolecular Structure & Dynamics, ISSN 0739-1102 Volume 22, Issue Number 1, (2004) He starts with a restricted set of AAs, and just a couplet code. I am sure you are familiar with it, so what am I missing?
That could be considered a variation of the frozen accident model, in which direct codon-amino acid interactions did not determine the code. Trifonov suggests that the enthalpy of codon/anti-codon interactions determined the code. The first aa's used the most stable interactions. Later amino acids used the best available. The problem with all of this is that his order of aa incorporation, and the method by which he determined it, are not universally accepted.

Loren Williams · 12 November 2010

I ...would be delighted to be ...directed to more membrane-origin research.
Check out Jack Szostak. http://www.hhmi.org/research/investigators/szostak_bio.html

Mike Elzinga · 13 November 2010

Ichthyic said: It’s more “special” to ID/creationists. by special, do you mean ala "short bus"?
:-) Hehe; that too.

henry · 13 November 2010

Loren Williams said: It is true that translation is outrageously complex, and meets all the requirements of an irreducibly complex system. Take away the large subunit or the small subunit or the mRNA or the rRNA or the ribosomal proteins or the tRNA or the ions or the amino acids or whatever and it does not work. But never-the-less, we have detailed models, discussed in the last session of the meeting (video posted soon), all supported by data, all experimentally accessible, for ribosomal origins and evolution.
The first two statements seem to contradict the third. There is an irreducibly complex system in the present, but there wasn't one in the past?

NoNick · 13 November 2010

harold said: Steve P. and FL - Since you guys are both cDesignproponentists, I'd like to ask you BOTH the same same questions. I'm looking for evidence-based replies that I can independently and objectively verify. Who designed what? When? How?
Thank you for asking this question harold. I believe it "is directly OOL related and OOL relevant". I hope that FL will continue to keep this thread on topic and have the intellectual honesty to address the question you've put forth. As FL has so eloquently stated, "Hey guys, it’s YOUR responsibility to keep this thread on topic", perhaps as a participant in the thread he would like to lead by example. What say you FL ?

Cubist · 13 November 2010

henry said:
Loren Williams said: It is true that translation is outrageously complex, and meets all the requirements of an irreducibly complex system. Take away the large subunit or the small subunit or the mRNA or the rRNA or the ribosomal proteins or the tRNA or the ions or the amino acids or whatever and it does not work. But never-the-less, we have detailed models, discussed in the last session of the meeting (video posted soon), all supported by data, all experimentally accessible, for ribosomal origins and evolution.
The first two statements seem to contradict the third. There is an irreducibly complex system in the present, but there wasn't one in the past?
If IC systems can indeed be produced by evolution, I fail to see how "no IC system in the past" contradicts "IC system in the present". Are you suggesting that ID-pushers are correct to assert that IC systems cannot be produced by evolution? If you are, please explain the error in Hermann J. Muller's 1918 paper, GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499), which makes an awfully strong case for IC systems being an expected product of evolution. The money quote, to my way of thinking, is this (emphasis in the original text):
...thus a complicated machine was gradually built up whose effective working was dependent upon the interlocking action of very numerous different elementary parts or factors, and many of the characters and factors which, when new, were originally merely an asset finally became necessary because other necessary characters and factors had subsequently become changed so as to be dependent on the former.

Cubist · 13 November 2010

Just for grins, let's agree that FL's quotation from Horgan is 100% accurate -- that abiogenesis is indeed "the weakest strut" in biology. So what? By definition, some aspect of biology must be "the weakest strut" at any given moment, after all. So to my way of thinking, calling abiogenesis "the weakest strut" in biology is kind of like saying that water is wet... yes, it's true, but in and of itself, the statement isn't particularly interesting or significant.
So, sure, abiogenesis is currently "the weakest strut" in biology. Does that mean abiogenesis will always be "the weakest strut"? No, it doesn't.
Does that mean abiogenesis is completely groundless and evidence-free? Again: No, it doesn't -- rather, it just means that at the present time, abiogenesis has less supportive evidence than any other aspect of biology. Tomorrow, or next year, some abiogenesis researcher might well discover some new data which causes the "least amount of supportive evidence" title to be transferred to some other aspect of biology.
Does that mean abiogenesis is so poorly supported by the evidence that abiogenesis should be disregarded? Again, no. Since "weakest" is a comparative term, calling abiogenesis "the weakest strut" could easily be the equivalent of pointing out that whoever is the last man on the Fortune 500 list of the world's richest people is the "poorest" person on that list.
If anybody wants to argue that abiogenesis is unsupported, fine; I say go for it! The catch is, you're gonna have to argue that abiogenesis is unsupported. And you don't do that by arguing "other aspects of biology are better-supported"; rather, you do it by arguing that "abiogenesis is unsupported". You up for that task, FL?

Rolf Aalberg · 13 November 2010

Cubist, right on the spot! From the very beginning FL has shown how he is as qualified to participate as a blind paraplegic in a downhill bicycling contest. What’s the relevance of the relative number of cdesign proponentsists in the USA with respect to OOL research? He is a fish out of the water here. So am I, but I’ve got a built-in BS detector.

Paul Burnett · 13 November 2010

Mike Elzinga said: There are two; the one you refer to and the one I have been referring to.
Neither one of them mentions "intelligent design," other than in the second one's biography of Dembski.

John Kwok · 13 November 2010

Not just this question from harold, which is superb:
NoNick said:
harold said: Steve P. and FL - Since you guys are both cDesignproponentists, I'd like to ask you BOTH the same same questions. I'm looking for evidence-based replies that I can independently and objectively verify. Who designed what? When? How?
Thank you for asking this question harold. I believe it "is directly OOL related and OOL relevant". I hope that FL will continue to keep this thread on topic and have the intellectual honesty to address the question you've put forth. As FL has so eloquently stated, "Hey guys, it’s YOUR responsibility to keep this thread on topic", perhaps as a participant in the thread he would like to lead by example. What say you FL ?
The onus is on both Steve P. and FL to explain what credible, testable hypotheses have been stated - and then rigorously testeed - by ID "scientists" like Behe, Dembski, Marks, Meyer and Wells which would demonstrate that Intelligent Design is a better, more comprehensive, theory than modern evolutionary theory (Modern Synthesis) in accounting for the origins, history, and current complexity of Planet Earth's biodiversity. The Intelligent Design IDiots have been contending for years that theirs is a much better theory than evolution. If that is the case - and not neglecting the fact that none of it has been published in credible mainstream scientific journals (Am talking now about the key principles of ID, not other research that they may have done not related to ID) - then how come they have yet to demonstrate ID's "superiority" in explaining how and why Planet Earth's biodiversity has reached its present state of complexity? Asking for the identity of the Intelligent Designer is too easy a question (or the related ones which harold also asks). If they want to contend that theirs is a credible scientific alternative to the Modern Synthesis Theory of Evolution, then prove it. Again I posed the same question as to ID's utility in explaining Planet Earth's biodiversity to Behe and Dembski in private e-mail correspondence with both. They couldn't answer my question, but either evaded it or ignored it. If Steve P. and FL can offer a scientfically rigorous set of explanations in defense of ID, then IMHO they may be "geniuses" more deserving of such recognition than Intelligent Design advocates with Ph. D. degrees like Dishonesty Institute mendacious intellectual pornographers Behe and Dembski.

Dale Husband · 13 November 2010

Gee, what an arrogant little @$$hole we have here! Do you moderate this forum, FL? If not, then fuk off!
FL said:

I don’t give a CRAP about Horgan’s "assessment". It’s irrelevant to what is taking place here.

Not correct, Mike. SciAm's John Horgan's long-standing assessment of the state of prebiotic evolution, is directly OOL related and OOL relevant, unlike your attempt to derail this thread by opening a separate discussion of Dembski & Mark's journal-published, peer-reviewed paper. Whether you agree or disagree with his assessment, Horgan's statement IS topical, especially since reflections or echoes of Horgan's statement can be (and have already been) specifically pointed out within two of the Virtual Workshop researchers' abstracts. If you now wish to discuss a previous thread topic, namely Dembski's 1999 IVP book Intelligent Design and specifically how Dembski's 3-point hypothesis bridged science and theology, (that's the thread where you brought up the Dembski/Marks paper and was informed that the paper doesn't say anything about bridging science and theology), that issue must be discussed in a separate thread. Please don't derail this thread, Mike. This one is about OOL and the Virtual Workshop. FL

harold · 13 November 2010

Loren Williams -

Thank you very much for the link. I will check out some original articles.

It does seem that this lab is actively pursuing research on replicating membranes that coordinate their replication with that of enclosed replicating nucleotide-AA based contents. That is clearly an important element in any really solid model of origin of cellular life.

Another fascinating issue is the emergence of steep, regulated ionic gradients between the extracellular environment and the intracellular environment. That seems to have been a very early event.

A search for "origin of ion channels" on Pubmed didn't seem to turn up any OOL/very early life research, but did turn up something that some people here may find interesting. http://www.ncbi.nlm.nih.gov/pubmed/20808886

John Kwok · 13 November 2010

Harold, You might also find fascinating details on the Rockefeller University evolution symposium that was held over the course of two days back in May 2008. Carl Zimmer and Genie Scott were there and wrote some summaries about that. I think there may also be videos from the sessions, especially on the one devoted to the origins and early history of life on Earth, which featured a talk by Koonin:
harold said: Loren Williams - Thank you very much for the link. I will check out some original articles. It does seem that this lab is actively pursuing research on replicating membranes that coordinate their replication with that of enclosed replicating nucleotide-AA based contents. That is clearly an important element in any really solid model of origin of cellular life. Another fascinating issue is the emergence of steep, regulated ionic gradients between the extracellular environment and the intracellular environment. That seems to have been a very early event. A search for "origin of ion channels" on Pubmed didn't seem to turn up any OOL/very early life research, but did turn up something that some people here may find interesting. http://www.ncbi.nlm.nih.gov/pubmed/20808886

Gary Hurd · 13 November 2010

Loren Williams said: That (Trifonov 2004) could be considered a variation of the frozen accident model, in which direct codon-amino acid interactions did not determine the code. Trifonov suggests that the enthalpy of codon/anti-codon interactions determined the code. The first aa's used the most stable interactions. Later amino acids used the best available. The problem with all of this is that his order of aa incorporation, and the method by which he determined it, are not universally accepted.
Loren, I don't ever expect "universal acceptance" of anything. However, what are some articles that you would recommend I read as alternatives?

David Utidjian · 13 November 2010

Rolf Aalberg said: From the very beginning FL has shown how he is as qualified to participate as a blind paraplegic in a downhill bicycling contest.
Rolf, that is an insult to differently abled people AND to bicycles! Either one of which is far more qualified roll downhill (contest or not) than FL is to participate in discussion about science.

Mike Elzinga · 13 November 2010

Paul Burnett said:
Mike Elzinga said: There are two; the one you refer to and the one I have been referring to.
Neither one of them mentions "intelligent design," other than in the second one's biography of Dembski.
I suspect for the reason that they didn’t want their papers rejected. However, both papers inject the same gratuitous use of “information” and the published paper takes a conscious pot-shot at mutation and evolution. Both papers contain the fundamental misconceptions that Dembski and the rest of the ID/creationists have been using since Morris and Gish introduced them. As far a “endogenous information,” “exogenous information,” “active information,” and “conservation of information” are concerned, what is the point of taking a problem like a combination lock, for example, and attaching the word “information” to the solution space of the correct combination? If the combination then gets restricted to odd numbers, why not just simply say that the problem is now half as difficult? Why take the logarithm of the solution spaces, (called endogenous information and exogenous information respectively) subtract them, and of all things, call it “active information?” What is the point? Then they slip this language into their discussion of evolution and things like Dawkins’s Weasel algorithm. Why? Is it gratuitous, or is there a meme they are trying to get established in the peer-review literature? That meme goes back to Henry Morris, and has a well-traced history in screwing up the public perceptions of thermodynamics. Look at their discussion of mutation and survival and you can recognize the standard set of misconceptions and memes of the ID/creationists there also. So you don’t see “intelligent design” in these papers, but you see them attempt to sneak in the ID/creationist misconceptions and memes along with the way ID/creationists think about stochastic processes in evolution. After 40+ years of watching how ID/creationists construct their pseudo-science, I see this kind of thinking popping out of ID/creationist writing all the time. And I know its history.

Matt Young · 13 November 2010

... please explain the error in Hermann J. Muller’s 1918 paper ...

Muller's paper is very interesting indeed; in fact Paul Strode and I quote the same passage in our book on evolution and creation. I do not know enough to know whether Behe should have known about the Muller paper, but we conclude,

Behe thinks incorrectly that evolution adds parts, one by one, as if organelles were made out of whole cloth. Muller recognized that parts were gradually modified to perform new functions, until eventually one or more parts became crucial. In 1939, he coined the term "interlocking complexity," and thus anticipated Behe's "discovery" by nearly 60 years.

John Kwok · 13 November 2010

Have heard Ken Miller reference this very paper, Matt, showing that it is the first instance of "irreducible complexity" ever mentioned (or rather alluded to) but in a well-established scientific sense, not in the form which Behe et al. are hoping for:
Matt Young said:

... please explain the error in Hermann J. Muller’s 1918 paper ...

Muller's paper is very interesting indeed; in fact Paul Strode and I quote the same passage in our book on evolution and creation. I do not know enough to know whether Behe should have known about the Muller paper, but we conclude,

Behe thinks incorrectly that evolution adds parts, one by one, as if organelles were made out of whole cloth. Muller recognized that parts were gradually modified to perform new functions, until eventually one or more parts became crucial. In 1939, he coined the term "interlocking complexity," and thus anticipated Behe's "discovery" by nearly 60 years.

John Kwok · 13 November 2010

An excellent terse summary of Dembski and company's modus operandi:
Mike Elzinga said: Then they slip this language into their discussion of evolution and things like Dawkins’s Weasel algorithm. Why? Is it gratuitous, or is there a meme they are trying to get established in the peer-review literature? That meme goes back to Henry Morris, and has a well-traced history in screwing up the public perceptions of thermodynamics. Look at their discussion of mutation and survival and you can recognize the standard set of misconceptions and memes of the ID/creationists there also. So you don’t see “intelligent design” in these papers, but you see them attempt to sneak in the ID/creationist misconceptions and memes along with the way ID/creationists think about stochastic processes in evolution. After 40+ years of watching how ID/creationists construct their pseudo-science, I see this kind of thinking popping out of ID/creationist writing all the time. And I know its history.
However, Mike, I think you are missing the point that Dembski, Marks et al. can claim that they are really discussing Intelligent Design and got it into a peer reviewed-published paper but opted not to mention the words "Intelligent Design" for fear that the "Darwinist" mob would see through their shenanigans and ensure that the paper be "EXPELLED" from the journal in question as a probable manuscript worthy of publication.

Mike Elzinga · 13 November 2010

John Kwok said: However, Mike, I think you are missing the point that Dembski, Marks et al. can claim that they are really discussing Intelligent Design and got it into a peer reviewed-published paper but opted not to mention the words "Intelligent Design" for fear that the "Darwinist" mob would see through their shenanigans and ensure that the paper be "EXPELLED" from the journal in question as a probable manuscript worthy of publication.
Well, that claim came out later even though it isn’t mentioned in the paper. But I haven’t overlooked it; I just didn’t mention it. This is why dealing with ID/creationists and their rube army is tricky in a public forum. We all know from nearly 50 years of historical behavior that any hint of speculation on our part gets used in their mud wrestling and contorted word-gaming. But there is no denying the conceptual errors and the gratuitously inflated introduction of memes and jargon in the context of comparing the relative difficulties of solving problems, and then using those memes to attack and mischaracterize genetic algorithms. The Abel paper, even though it is not as visible, shows how these memes and misconceptions play a central role in ID/creationist “critiques” of the program of research in real science.

Mike Elzinga · 13 November 2010

I have a question for Loren concerning the “onion” model.

One of the more remarkable things about the existence of life as we know it is that much of it exists in the energy range of liquid water. This means that binding energies in kBTs (kB is Boltzmann’s consant and T is the absolute temperature) are on the order of 0.01 eV to about 0.04 eV.

You mentioned in your talk that those “inner cores” are probably the oldest, and were probably formed at higher temperatures.

This seems to demonstrate the cascading nature of evolution in which we find the earlier, more primitive “substrates”, if you like, have been formed in more energetic environments. These are then transported into lower energy environments and become the building blocks of later, more complex structures that are somewhat more delicate.

Are there any data on the average binding energies of the constituents in each of those “onion” layers?

Marco · 13 November 2010

Nita requested we not record her talk. Steve's talk was recorded and will be posted pending an upcoming journal submission. -Marco
Gary Hurd said: I noticed that talks are not avialble from; 4:20 pm – 4:40 pm EST Making Sense of Life’s Amino Acid Alphabet Steve Freeland University of Hawaii 1:25 pm – 1:50 pm EST Extracellular Polymeric Substances As Armor Against Cytotoxic Minerals Nita Sahai University of Wisconsin, Madison Idle curiosity: Why not?

Gary Hurd · 13 November 2010

Marco said: Nita requested we not record her talk. Steve's talk was recorded and will be posted pending an upcoming journal submission. -Marco
I thought it might be something along those lines. However, if I were the funding agency, and/or the conference organizer, there would be no holdouts.

John Kwok · 13 November 2010

Agreed:
Gary Hurd said:
Marco said: Nita requested we not record her talk. Steve's talk was recorded and will be posted pending an upcoming journal submission. -Marco
I thought it might be something along those lines. However, if I were the funding agency, and/or the conference organizer, there would be no holdouts.
I believe all the talks at the two-day symposium on Evolution held in May, 2008 at Rockefeller University were videotaped and may still be available online.

henry · 13 November 2010

Cubist said:
henry said:
Loren Williams said: It is true that translation is outrageously complex, and meets all the requirements of an irreducibly complex system. Take away the large subunit or the small subunit or the mRNA or the rRNA or the ribosomal proteins or the tRNA or the ions or the amino acids or whatever and it does not work. But never-the-less, we have detailed models, discussed in the last session of the meeting (video posted soon), all supported by data, all experimentally accessible, for ribosomal origins and evolution.
The first two statements seem to contradict the third. There is an irreducibly complex system in the present, but there wasn't one in the past?
If IC systems can indeed be produced by evolution, I fail to see how "no IC system in the past" contradicts "IC system in the present". Are you suggesting that ID-pushers are correct to assert that IC systems cannot be produced by evolution? If you are, please explain the error in Hermann J. Muller's 1918 paper, GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499), which makes an awfully strong case for IC systems being an expected product of evolution. The money quote, to my way of thinking, is this (emphasis in the original text):
...thus a complicated machine was gradually built up whose effective working was dependent upon the interlocking action of very numerous different elementary parts or factors, and many of the characters and factors which, when new, were originally merely an asset finally became necessary because other necessary characters and factors had subsequently become changed so as to be dependent on the former.
It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.

Stanton · 13 November 2010

henry the racist bigot babbled: It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.
And yet, Intelligent Design proponents are totally and completely incapable of defining what "Irreducibly Complex" means beyond "I'm too stupid and too arrogant to ever bother understanding how this biological structure could have evolved, so I'll just lie and claim it couldn't have evolved." And Intelligent Design proponents also refuse to demonstrate how to distinguish between an "Irreducibly complex" system, and an evolved system. Why is that, henry?

Stanton · 13 November 2010

henry the idiot babbled: It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.
Also, if Intelligent Design is correct, and nothing could have evolved, then how come Intelligent Design proponents refuse to discuss how the Intelligent Designer magically poofed Irreducibly Complex systems into existence? How come Intelligent Design proponents refuse to discuss even how to recognize the Intelligent Designer's handiwork, beyond saying that "(random biological system) is too complicated for me to understand, therefore, it is Irreducibly Complex"?

Cubist · 13 November 2010

henry said:
Cubist said:
henry said:
Loren Williams said: It is true that translation is outrageously complex, and meets all the requirements of an irreducibly complex system. Take away the large subunit or the small subunit or the mRNA or the rRNA or the ribosomal proteins or the tRNA or the ions or the amino acids or whatever and it does not work. But never-the-less, we have detailed models, discussed in the last session of the meeting (video posted soon), all supported by data, all experimentally accessible, for ribosomal origins and evolution.
The first two statements seem to contradict the third. There is an irreducibly complex system in the present, but there wasn't one in the past?
If IC systems can indeed be produced by evolution, I fail to see how "no IC system in the past" contradicts "IC system in the present". Are you suggesting that ID-pushers are correct to assert that IC systems cannot be produced by evolution? If you are, please explain the error in Hermann J. Muller's 1918 paper, GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499), which makes an awfully strong case for IC systems being an expected product of evolution. The money quote, to my way of thinking, is this (emphasis in the original text):
...thus a complicated machine was gradually built up whose effective working was dependent upon the interlocking action of very numerous different elementary parts or factors, and many of the characters and factors which, when new, were originally merely an asset finally became necessary because other necessary characters and factors had subsequently become changed so as to be dependent on the former.
It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.
It may be worth noting that the 61-word quote I provided is taken from a paper that's 78 pages long. Whatever do you think Muller might have been writing about in the other 77+ pages of GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499), henry? Would you care to, like, substantiate your accusation that Muller was guilty of assuming his conclusion, by working thru Muller's reasoning and demonstrating that Muller did, indeed, assume his conclusion? Or do you expect everyone to just, you know, take your bald, unsupported word for it?
Apart from that, I note that you aren't confronting the point Muller explicitly raised (in this quote: Namely, that evolutionary changes can modify the parts of a biological system so that a component which had been merely beneficial at some time in the past, becomes necessary. If the ID-pushers' "IC systems can't evolve" argument is valid, Muller's argument must be universally invalid -- Muller's argument cannot ever be valid under any circumstances whatsoever. Do you think you can demonstrate that, henry?
Any damn-fool ignoramus can mindlessly repeat "is not!" in reply to any scientific conclusion, henry. That sort of response-on-autopilot doesn't require the mindless repeater to actually, like, understand whatever-it-is they happen to be automatically gainsaying. Likewise, any damn-fool ignoramus can mindlessly repeat "he assumed his conclusion!" without the tawdry necessity of, like, reading and understanding the paper they're mindlessly replying to.
So I once again invite you, henry, to read Muller's 1918 paper, GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499), and demonstrate where Muller screwed up. You won't demonstrate where Muller screwed up by shouting detail-free accusations of logical fallacy; all that will do is provide evidence to support the proposition that you, henry, are a damn-fool ignoramus. If you want to demonstrate where Muller screwed up, you're going to have to actually, like, demonstrate where Muller screwed up, and not just baldly assert that Muller screwed up.
And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...



Stanton · 14 November 2010

Cubist said: And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...
henry is one of those Christians who believes that breaking any Commandment, or committing any sort of sin is permissible, so long as it's done with the intent of scoring brownie points from Jesus: henry is a shameless liar, and he arrogantly looks down at all of us because we don't assume that the literal reading of the Book of Genesis is a literal and accurate description of reality. Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.

Cubist · 14 November 2010

Stanton said:
henry the racist bigot babbled: It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.
And yet, Intelligent Design proponents are totally and completely incapable of defining what "Irreducibly Complex" means beyond "I'm too stupid and too arrogant to ever bother understanding how this biological structure could have evolved, so I'll just lie and claim it couldn't have evolved."
Actually, Stanton, ID-pushers have defined what "irreducibly complex" means. In fact, they've done so twice that I know of, and they may well have been generated third, fourth, fifth, etc definition(s) of "irreducibly complex".
According to Michael Behe, a system is 'irreducibly complex' if every last one of its component parts must necessarily be present and intact and functioning in order for the system to perform its function; as it happens, Behe's 'irreducible complexity' is exactly the same as Muller's concept of 'interlocking complexity', apart from the fact that Behe gave the concept a somewhat different label. It is worth noting that this is Behe's original definition for 'irreducible complexity'; his current definition of 'irreducible complexity requires that the putative IC system be made up of at least three distinct components.
Anyhow, the second definition of 'irreducible complexity' was created by ID-pusher William A Dembski. And according to Dembski, a system is 'irreducibly complex' if that system is the absolutely, positively, simplest system which is physically capable of performing its particular function. Dembski's version of 'irreducible complexity' is not particularly well-known, of course, but he promulgated it nonetheless, never mind that Behe already had a perfectly good (albeit second-hand) version of 'irreducible complexity' of Behe's own.
And Intelligent Design proponents also refuse to demonstrate how to distinguish between an "Irreducibly complex" system, and an evolved system.
That's easy to understand: In ID-pushers' parlance, the term 'irreducibly complex' is employed as if it was a synonym for 'unevolvable'. This, of course, is simply not so. Behean-IC systems can evolve thru a boring old, mundane, stepwise evolutionary process whose steps fall into one of three classes, those classes being (a) add a new component to the system, (b) modify one of the existing components of the system, and (c) remove one of the existing components of the system. As for Dembskian-IC systems, well, the defining characteristic of a Dembskian-IC system is its simplicity, not its complexity; I am unsure why anyone would think that evolving a simpler system is, or could be, or ought to be, harder than evolving a more complex system, but Dembski's version of IC is what it is, and ID-pushers do use the term 'irreducibly complex' as if that term really did mean 'unevolvable'. [shrug]

Frank J · 14 November 2010

Mike Elzinga said:

A few years ago, creationist Mike Behe wrote, “Professor Bottaro, perhaps sensing that the paper he cites won’t be persuasive to people who are skeptical of Darwinian claims, laments that ‘Behe and other ID advocates will retreat further and further into impossible demands, such as asking for mutation-by-mutation accounts of specific evolutionary pathways…’ Well, yes, of course that’s exactly what I ask of Darwinian claims–a mutation-by-mutation account of critical steps (which will likely be very, very many), at the amino acid level.” And Behe then demanded, “…not only a list of mutations, but also a detailed account of the selective pressures that would be operating, the difficulties such changes would cause for the organism, the expected time scale over which the changes would be expected to occur, the likely population sizes available in the relevant ancestral species at each step, other potential ways to solve the problem which might interfere, and much more.”

I just love the irony in Behe’s “demands.” With the billions of examples of evolving systems from all of chemistry and physics; and with all the examples that have been elucidated in biological systems already, Behe thinks this isn’t good enough (and even said so at Dover). It is amazing that Behe doesn’t seem to understand that, given all of what we already know, it is Behe and the ID/creationist gang that are under the gun to find the “laws of physics and chemistry” that prohibit continued evolution right on up to living, replicating systems. Given all the billions of possibilities that the science community can think of, it is entirely reasonable to explore as much of what we can to narrow the possibilities. Instant gratification may be the central focus of ID/creationism and its practitioners, but it has never been a part of real science. Real scientists work.
Behe may not "seem" to undertand it, but a safe bet is that he does understand it. As you know, anti-evolution activists have been peddling that double standard for decades. And you hit the nail on the head as to how they can get away with it with the words "instant gratification." Which is exactly what their audience - both the hopeless evolution deniers and the self-describes "open minded" subsets - want. These people are not unlike peddlers of alternative medicine who demand that mainstream medicine produces something that raises the dead before they accept it. While they refuse to subject their alternative to double-blind tests because it's not their task to match mainstream medicine's "patheric level of detail."

Frank J · 14 November 2010

(what happens when I skip the spel chek)

John Kwok · 14 November 2010

How do Intelligent Design proponents explain mass extinctions and their aftermath, the relatively rapid diversification of some lineages (e. g. dinosaurs, mammals) to replace those which went extinct (e. g. most mammal-like reptiles, nonavian dinosaurs)? How do they explain the existence of the three great marine faunas in the Phanerozoic recognized by Jack Sepkoski via his statistical analysis of the Phanerozoic marine fossil record? What predictions could they make about these fluctuations in taxonomic diversity? Don't think we can count on these IDiots for any answers, period, Stanton:
Stanton said:
henry the idiot babbled: It looks like the evolution of IC systems is assumed to prove that evolution of IC systems occurred.
Also, if Intelligent Design is correct, and nothing could have evolved, then how come Intelligent Design proponents refuse to discuss how the Intelligent Designer magically poofed Irreducibly Complex systems into existence? How come Intelligent Design proponents refuse to discuss even how to recognize the Intelligent Designer's handiwork, beyond saying that "(random biological system) is too complicated for me to understand, therefore, it is Irreducibly Complex"?

John Kwok · 14 November 2010

I agree with your other observations about our latest "drive by" IDiot, Stanton, but these are quite profound:
Stanton said: Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.

Loren Williams · 14 November 2010

Hi MIke, This is a really good question. And yes that's correct that RT (or kT) sets the threshold. There has been a lot of work on how maromolecules adapt to varying conditions, in particular temperature. There are practical reasons for this: it has long been thought (hoped?) that the proteins and RNA from extremophiles would give the best diffracting crystals. One can see that the thermus thermophilus 23S rRNA is more G/C rich than the ecoli 23s rRNA. But back specifically to your question, it would be interesting to look at each of the elements used to build the rRNA in the Bokov and Steinberg model (for this purpose their model would work better than our onion model), to see if the thermal stabilities follow any kind of trend that could be linked to the geological record. We are always looking for ways to link ribosomal evolution to the geological record, so you have given me something really useful to think about. In fact we have already melted each of the Bokov/Steinberg elements computationally to see if they form the predicted structures (they do). But for getting reliable Tm's, actually doing the experiment would be best. That would involve making each of those RNA elements, expermentally melting each of them to find the Tm's, and looking for trends, the way Eric Gaucher has done it for EFTU. A lot of work, but it could provide very useful information. Thanks!! Loren

harold · 14 November 2010

I got "side tracked" into actually discussing some interesting science, but I had meant to note that -

Behe's "every mutation, every selective force" rant is comical. I heard he got kicked out of a casino recently. He wouldn't believe that he rolled craps until they had told him every subatomic force that had acted on the dice.

However, my attitude toward "intelligent design" is much more reasonable.

All they have to do is give some independently verifiable evidence of who the designer is, what the designer did, how, and when.

That's all I ask for.

Frank J · 14 November 2010

harold said: I got "side tracked" into actually discussing some interesting science, but I had meant to note that - Behe's "every mutation, every selective force" rant is comical. I heard he got kicked out of a casino recently. He wouldn't believe that he rolled craps until they had told him every subatomic force that had acted on the dice. However, my attitude toward "intelligent design" is much more reasonable. All they have to do is give some independently verifiable evidence of who the designer is, what the designer did, how, and when. That's all I ask for.
I ask for even less, and don't get that either. I see no need to bring up the designer, other than to rub it in to their fans that Behe admitted at Dover that the designer might no longer exist. The only part that could ever make ID scientific is the what, when and how questions. And what little they have speculated on them to date concedes all the basics (~4 billion years of life, common descent) to mainstream science, and completely contradicts YEC. That too is worth rubbing in to their fans. Being increasingly sensitive to their need for support from all "kinds" of rank-and-file Biblical literalists, however, ID peddlers are more evasive of those crucial questions than ever before. And they desperately look for any excuse to keep the topic away from their "theory" and on "weaknesses" of "Darwinism." Dwelling on the designer only helps them pull the old bait-and-switch between methodological and philosophical naturalism.

John Kwok · 14 November 2010

If we are to take the Intelligent Design mendacious intellectual pornographers at their word, then they need to explain how Intelligent Design is a superior, much better, alternative than modern evolutionary theory in accounting for Planet Earth's biodiversity. So far they haven't and I am willing to bet that they will never do so:
Frank J said:
harold said: I got "side tracked" into actually discussing some interesting science, but I had meant to note that - Behe's "every mutation, every selective force" rant is comical. I heard he got kicked out of a casino recently. He wouldn't believe that he rolled craps until they had told him every subatomic force that had acted on the dice. However, my attitude toward "intelligent design" is much more reasonable. All they have to do is give some independently verifiable evidence of who the designer is, what the designer did, how, and when. That's all I ask for.
I ask for even less, and don't get that either. I see no need to bring up the designer, other than to rub it in to their fans that Behe admitted at Dover that the designer might no longer exist. The only part that could ever make ID scientific is the what, when and how questions. And what little they have speculated on them to date concedes all the basics (~4 billion years of life, common descent) to mainstream science, and completely contradicts YEC. That too is worth rubbing in to their fans. Being increasingly sensitive to their need for support from all "kinds" of rank-and-file Biblical literalists, however, ID peddlers are more evasive of those crucial questions than ever before. And they desperately look for any excuse to keep the topic away from their "theory" and on "weaknesses" of "Darwinism." Dwelling on the designer only helps them pull the old bait-and-switch between methodological and philosophical naturalism.

Mike Elzinga · 14 November 2010

Loren Williams said: But for getting reliable Tm's, actually doing the experiment would be best. That would involve making each of those RNA elements, expermentally melting each of them to find the Tm's, and looking for trends, the way Eric Gaucher has done it for EFTU. A lot of work, but it could provide very useful information.
Loren; thanks for the response. One of the patterns that are more familiar to physicists and chemists is the decrease in binding energies (“melting” temperatures) as the complexity of condensed matter systems increases. Potential energy wells get shallower and more complex. I put up this rough guide to binding energies on another thread some time ago. Quarks & Gluons: billions of eV (GeV, 109 eV) Nuclei: on the order of millions of eV (MeV, 106 eV) Inner electron shells of atoms: on the order of keV (~103 eV) Hydrogen atom: 13.6 eV (on the order of 10 eV) Chemical bonds: on the order of 1 to 5 eV Solids (Al, Cu, Fe, W): on the order of 0.1 to 0.4 eV Liquid water: on the order of 0.01 to 0.04 eV As temperatures decrease and the kinetic energies of atoms and molecules become comparable to the depths of the potential wells of their mutual interactions, the details and nuances of those shallow wells come more and more into play. Provided we don’t freeze everything out into the ground state, having a temperature bath to keep things “jiggling” and exploring all the possibilities is what is required; and also a good solvent like water or liquid H2S or some other molecule with a good dipole or multipole moments. So, in general, one would expect complexity to increase with decreasing temperature within the energy range in which the solvent is a liquid. This doesn’t take catalysis into consideration in the rates of formation of complex structures, but I would suspect that background temperature has a lot to do with the rates of survival of these structures. Again, this presumes that these structures exist just below their melting temperatures and are shuttled into environments in which they can become the templates for even more complicated structures that can exist at slightly lower temperatures. I’m putting this line of thinking here on PT for our general readers so they can see where physicists and chemists are coming from in this exploration. Biologists often think of these structures from the perspective of their complexity and from the point of view of evolutionary landscapes and hill-climbing under pressures of selection. I see these hills, turned upside down, as potential wells which are the phenomenological summary of all those subtle potential well details in the mutual interactions of these structures. Evolution and natural selection are taking place at every level of complexity; right down to the molecular level. The “living” part of these structures again has to be driven by a temperature bath that excites the mechanisms that synchronize and coordinate processes that emerge as a result of increased complexity. But, at the same time, that temperature bath mustn’t melt the structures that have already been formed. There is no “irreducible complexity” involved in any of this; it is what emerges and what gets reused and adapted as subtle changes in environment and structure take place.

Mike Elzinga · 14 November 2010

Frank J said: These people are not unlike peddlers of alternative medicine who demand that mainstream medicine produces something that raises the dead before they accept it. While they refuse to subject their alternative to double-blind tests because it's not their task to match mainstream medicine's "pathetic level of detail."
That’s a really good analogy; demanding that mainstream medicine raise the dead before they accept it. Of course, their medicine kills people; so all they do is deny that they are dead, or that mainstream medicine did no good.

Paul Burnett · 14 November 2010

Mike Elzinga said: Of course, their medicine kills people; so all they do is deny that they are dead...
Somehow that reminds me what you should do when you realize you are riding a dead horse.

Ichthyic · 14 November 2010

Quarks & Gluons: billions of eV (GeV, 109 eV)

If one could somehow figure a way to fission quarks, would they release that energy?

sorry, understanding how energy works for subatomic particles was beyond my freshman physics course, and that was over a quarter of a century ago anyway.

Frank J · 14 November 2010

Paul Burnett said:
Mike Elzinga said: Of course, their medicine kills people; so all they do is deny that they are dead...
Somehow that reminds me what you should do when you realize you are riding a dead horse.
Their horse may be dead, but their audience is in denial of it, so they don't have to say anything about their horse. They just have to show that your horse can't travel faster than the speed of light, and their horse wins by default. What's really scary is that at least half of that audience is not hopeless evolution deniers.

John Kwok · 14 November 2010

Mike, I tend to agree with most of your observations here:
Mike Elzinga said: Biologists often think of these structures from the perspective of their complexity and from the point of view of evolutionary landscapes and hill-climbing under pressures of selection. I see these hills, turned upside down, as potential wells which are the phenomenological summary of all those subtle potential well details in the mutual interactions of these structures. Evolution and natural selection are taking place at every level of complexity; right down to the molecular level.
However - and I wouldn't expect you to recall this - there is the added constraint imposed by "genealogy", or rather, more precisely, phylogeny. Certain evolutionary "pathways" have been taken by a given lineage in response to selective pressures imposed by the surrounding physical environment and interactions with other life, usually in the form of some kind of competition or predation. That's why for example, one would never expect to see a "crocoduck", since the archosaurian lineages which led to modern crocodiles and to birds diverged from each other relatively early in their evolutionary histories.

Mike Elzinga · 14 November 2010

Frank J said: They just have to show that your horse can't travel faster than the speed of light, and their horse wins by default.
:-) Hah! Given their understanding of relativity, I don’t think we have to worry about that anytime soon.

Mike Elzinga · 14 November 2010

John Kwok said: Certain evolutionary "pathways" have been taken by a given lineage in response to selective pressures imposed by the surrounding physical environment and interactions with other life, usually in the form of some kind of competition or predation. That's why for example, one would never expect to see a "crocoduck", since the archosaurian lineages which led to modern crocodiles and to birds diverged from each other relatively early in their evolutionary histories.
Indeed, John. The gentle “thermal tickling” of systems exploring complex systems of potential wells cannot have them jumping large “distances” to adjacent configurations. Those large jumps are tantamount to destroying the system and leaving no template for subsequent generations. Think of a puddle of water exploring the tiny dips and crevices in a nearly level floor or surface. The emerging patterns build off what is there. You don’t find the puddle suddenly in another location unless there is an earthquake; in which case you have started a different lineage. Sort of like entirely different life emerging again after it has been destroyed.

John Kwok · 14 November 2010

Mike I wouldn't want to stretch this analogy too much because simply after each of the mass extinctions there were surviving biota and it is from such surviving biota that one or more lineages underwent relatively rapid diversification that repopulated Planet Earth in a relatively short period of time, though still, that wasn't instanteous, but rather, over the course of millions of years following a mass extinction:
Mike Elzinga said: The gentle “thermal tickling” of systems exploring complex systems of potential wells cannot have them jumping large “distances” to adjacent configurations. Those large jumps are tantamount to destroying the system and leaving no template for subsequent generations. Think of a puddle of water exploring the tiny dips and crevices in a nearly level floor or surface. The emerging patterns build off what is there. You don’t find the puddle suddenly in another location unless there is an earthquake; in which case you have started a different lineage. Sort of like entirely different life emerging again after it has been destroyed.
But I do believe that it is fair to ask of Intelligent Design proponents how they can explain that there are mass extinctions (at least seven or eight recognized in the entire Phanerozoic Eon, approximately sligthly more than the last half billion years of our planet's geological history) and how does Earth's biodiversity recover eventually after each of these events. How could an Intelligent Designer be so foolish or stupid (or both) to have Earth's biodiversity subjected to mass extinctions nearly ten times? Maybe the Intelligent Designer isn't as wise or as omniscient (and omnipotent) as Intelligent Design proponents might wish.

Mike Elzinga · 14 November 2010

John Kwok said: Mike I wouldn't want to stretch this analogy too much because simply after each of the mass extinctions there were surviving biota and it is from such surviving biota that one or more lineages underwent relatively rapid diversification that repopulated Planet Earth in a relatively short period of time, though still, that wasn't instanteous, but rather, over the course of millions of years following a mass extinction:
Well, all of life is a huge dendritic structure spreading out in many “directions” or lineages. If part of that structure gets destroyed and some remains, what remains becomes a template for what follows. It’s all highly contingent.

But I do believe that it is fair to ask of Intelligent Design proponents how they can explain that there are mass extinctions (at least seven or eight recognized in the entire Phanerozoic Eon, approximately slightly more than the last half billion years of our planet’s geological history) and how does Earth’s biodiversity recover eventually after each of these events. How could an Intelligent Designer be so foolish or stupid (or both) to have Earth’s biodiversity subjected to mass extinctions nearly ten times? Maybe the Intelligent Designer isn’t as wise or as omniscient (and omnipotent) as Intelligent Design proponents might wish.

That hits the nail right on the head; and, I would suggest, this question can be addressed to Dembski, Behe, et. al. right down at the microscopic level. Why would a wise and omniscient “intelligent designer” allow so many mass extinctions of lineages at the molecular level if said designer knew the cascading effect of these?

John Kwok · 14 November 2010

It's been estimated that upwards to 91% of all metazoans were wiped out at the end of the Permian (the last - and therefore youngest - period of the Paleozoic Era) approximately 250 million years (In stark comparison, the terminal Cretaceous mass extinction (in which all nonavian dinosaurs became extinct) was "relatively" mild, with maybe no more than 30 to 40% of metazoans going extinct. How could an Intelligent Designer allow this to happen? That's a question that we need to ask of Intelligent Design proponents and their acolytes.

John Kwok · 14 November 2010

Agreed, especially as expressed here:
Mike Elzinga said: Well, all of life is a huge dendritic structure spreading out in many “directions” or lineages. If part of that structure gets destroyed and some remains, what remains becomes a template for what follows. It’s all highly contingent.
Stephen Jay Gould often spoke of contingency as an extremely important aspect of the history of life. I have posed a similar version of the very comments I wrote above to both Behe and Dembski, and neither one could offer any answer (Instead, I was ignored.).

Henry J · 14 November 2010

Quarks & Gluons: billions of eV (GeV, 109 eV) If one could somehow figure a way to fission quarks, would they release that energy? sorry, understanding how energy works for subatomic particles was beyond my freshman physics course, and that was over a quarter of a century ago anyway.

As far as I know, quarks (and leptons as well) are thought to be fundamental particles - not made of something smaller. Henry

Mike Elzinga · 14 November 2010

Ichthyic said: Quarks & Gluons: billions of eV (GeV, 109 eV) If one could somehow figure a way to fission quarks, would they release that energy? sorry, understanding how energy works for subatomic particles was beyond my freshman physics course, and that was over a quarter of a century ago anyway.
The processes of fission involve the electromagnetic (a long range interaction) repulsion among protons of the nucleus competing with the short-range strong nuclear force. This makes large nuclei relatively “fragile” relative to smaller nuclei. Pop in a neutron and the added energy can be enough to split such a nucleus and send additional neutron flying into adjacent nuclei; hence the possibility of a chain reaction. There isn’t a similar situation for assemblies of quarks interacting with the gluon field. Protons and neutrons, for example are made up of only three quarks. I suppose the corresponding analogy to fusion in the case of quarks would require another Big Bang. I don’t think we can do that yet. If you know of a neighbor who is about to do it in his basement, watch out! ;-)

dexitroboper · 14 November 2010

Well Ichthyic is in NZ where they do this sort of thing in their garage. SO a big bang might not be out of the question

Mike Elzinga · 14 November 2010

dexitroboper said: Well Ichthyic is in NZ where they do this sort of thing in their garage. SO a big bang might not be out of the question
:-) Now all he needs to do is direct that exhaust under a barbie grill and he can cook and have cold beer at the same time.

SWT · 14 November 2010

dexitroboper said: Well Ichthyic is in NZ where they do this sort of thing in their garage. SO a big bang might not be out of the question
I don't follow. That seems to me to be a rather reasonable thing to do in one's garage. Then again, I got mad at my parents when I was a kid because they wouldn't let me try to build the plasma torch I read about in an Amateur Scientist column in Scientific American.

Mike Elzinga · 14 November 2010

SWT said:
dexitroboper said: Well Ichthyic is in NZ where they do this sort of thing in their garage. SO a big bang might not be out of the question
I don't follow. That seems to me to be a rather reasonable thing to do in one's garage. Then again, I got mad at my parents when I was a kid because they wouldn't let me try to build the plasma torch I read about in an Amateur Scientist column in Scientific American.
That would have made a really neat steak knife. :-)

Loren Williams · 14 November 2010

Have y'all looked at Gogarten's tree of life that shows the extinct lineages?

Check it out:
http://web2.uconn.edu/gogarten/

henry · 14 November 2010

Stanton said:
Cubist said: And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...
henry is one of those Christians who believes that breaking any Commandment, or committing any sort of sin is permissible, so long as it's done with the intent of scoring brownie points from Jesus: henry is a shameless liar, and he arrogantly looks down at all of us because we don't assume that the literal reading of the Book of Genesis is a literal and accurate description of reality. Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.
You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.

John Kwok · 14 November 2010

You're utterly hopeless and delusional, henry. Even if you were right, there is the unfortunate fact that, independently of Darwin, Wallace developed the theory of evolution via natural selection:
henry said: You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Thanks for demonstrating once more the acutely dire state of your intellectually-challenged mind. You are certainly enjoying your membership in the Dishonesty Institute IDiot Borg Collective. May you Live Long and Prosper as a DI IDiot Borg drone.

John Kwok · 14 November 2010

Fascinating but they may also wish to look at Jack Sepkoski's work (solo and in collaboration with David Raup), some of Steve Gould's (in collaboration with David Raup and Daniel Simberloff), Michael Foote's and others who are carrying on in Gould and Sepkoski's legacy. Modeling taxonomic diversity change has been a staple of paleobiological research since the mid 1970s:
Loren Williams said: Have y'all looked at Gogarten's tree of life that shows the extinct lineages? Check it out: http://web2.uconn.edu/gogarten/

John Kwok · 14 November 2010

Loren - I might also note that Gogarten's tree isn't precisely scaled against time, so we're missing a lot of the detail, such as major instances of taxonomic diversification like the early Cambrian radiations leading to the Middle Cambrian Burgess Shale Fauna, the Great Ordovician Diversification Event, post-Ordovician, post-Devonian, post-Permian, post-Triassic, and post-Cretaceous episodes of taxonomic diversification in response to mass extinctions. Jack Sepokoski was the one who recognized three "evolutionary" marine faunas from the Phanerozoic marine fossil record and this work has been extended since his untimely death by his colleague Michael Foote and others (Sepkoski collaborated with his Ph. D. dissertation advisor Gould, Raup, and Simberloff in a number of early seminal papers back in the mid 1970s; similar studies of taxonomic diversification from the fossil record have been done for both vascular plants and vertebrates.):
John Kwok said: Fascinating but they may also wish to look at Jack Sepkoski's work (solo and in collaboration with David Raup), some of Steve Gould's (in collaboration with David Raup and Daniel Simberloff), Michael Foote's and others who are carrying on in Gould and Sepkoski's legacy. Modeling taxonomic diversity change has been a staple of paleobiological research since the mid 1970s:
Loren Williams said: Have y'all looked at Gogarten's tree of life that shows the extinct lineages? Check it out: http://web2.uconn.edu/gogarten/

Paul Burnett · 14 November 2010

John Kwok said: ...since his untimely death by his colleague Michael Foote and others...
Paleontology is more competitive than I realized...

Stanton · 14 November 2010

henry the idiot babbled: You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
I speak the truth, given as how you both shamelessly lie, and simultaneously imply that a literal reading of the Bible, with the sole exception of the "windows of Heavens" is somehow, magically metaphorical, is somehow, magically logical. And if you're trying to imply that Charles Darwin didn't write "On the Origins of Species" despite the fact that all of the evidence, including notes and eyewitness accounts of his family, friends and associates, you're a bigger moron than I give you credit for being. So, why don't you provide some evidence, or even explanation on why Creationism/Intelligent Design is supposed to be scientific? Oh, wait, you can't. So, why don't you get the hint and go away? Do you like repeatedly demonstrating that you are a malicious, idiotic bigot?

John Kwok · 14 November 2010

Yes, it can be cutthroat, but not like you think:
Paul Burnett said:
John Kwok said: ...since his untimely death by his colleague Michael Foote and others...
Paleontology is more competitive than I realized...
I believe Foote was an undergraduate student of Gould's at Harvard and earned his Ph. D. at Chicago under Raup and Sepkoski, where he is now continuing the pioneering work done by Raup, and especially, Sepkoski.

Cubist · 15 November 2010

henry said:
Stanton said:
Cubist said: And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...
henry is one of those Christians who believes that breaking any Commandment, or committing any sort of sin is permissible, so long as it's done with the intent of scoring brownie points from Jesus: henry is a shameless liar, and he arrogantly looks down at all of us because we don't assume that the literal reading of the Book of Genesis is a literal and accurate description of reality. Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.
You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Hello, henry! Have you had a chance to read GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499) yet? And would you care to, like, substantiate your accusation that Muller was guilty of assuming his conclusion, by working thru Muller’s reasoning and demonstrating that Muller did, indeed, assume his conclusion? Or do you expect everyone to just, you know, take your bald, unsupported word for it?

Frank J · 15 November 2010

Mike Elzinga said:
Frank J said: They just have to show that your horse can't travel faster than the speed of light, and their horse wins by default.
:-) Hah! Given their understanding of relativity, I don’t think we have to worry about that anytime soon.
But as you know, given their understanding of how to play word games, we have to always worry about something like it. Your link reminds me, however, that while AiG is as skilled at word games as the DI, their (relative) honesty prevents them from playing those word games to the fullest extent. They know that it's politically incorrect to unequivocally claim a young or old earth, when either one contradicts claims made by other creationists. But unlike the DI, AiG has to answer to a "higher authority."

Gary Hurd · 15 November 2010

Loren Williams said: Have y'all looked at Gogarten's tree of life that shows the extinct lineages? Check it out: http://web2.uconn.edu/gogarten/
The opening graphic remineded me of the comment made by Darwin toward the end of "The Origin of Species," "No doubt it is possible, as Mr. G.H. Lewes has urged, that at the first commencement of life many different forms were evolved; but if so, we may conclude that only a very few have left modified descendants." (6th Edition, 1872)

Gary Hurd · 15 November 2010

Thanks for that link, Loren,

I must read, Fournier GP, Gogarten JP (2010)
"Rooting the Ribosomal Tree of Life."
Molecular Biology and Evolution 27(8):1792-1801; doi:10.1093/molbev/msq057

John Kwok · 15 November 2010

I believe Jack Sepkoski died from a heart attack at the age of fifty (Steve Gould would out-live him by over a year if I'm not mistaken.). There was a substantial New York Times obituary written. Sepokoski's son Daniel is now a historian of science and has either written or edited volumes (I think both) describing, from a history of science perspective, the importance of Sepkoski's work:
Paul Burnett said:
John Kwok said: ...since his untimely death by his colleague Michael Foote and others...
Paleontology is more competitive than I realized...

Mike Elzinga · 15 November 2010

Frank J said: But unlike the DI, AiG has to answer to a "higher authority."
Yeah; Ken Ham.

Matt Young · 15 November 2010

... I don’t have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.

Oh, please! If you are not perceptive enough to recognize that the Henry troll was joking, please stop feeding it. On second thought, please stop feeding it anyway.

Mike Elzinga · 15 November 2010

John Kwok said: I believe Jack Sepkoski died from a heart attack at the age of fifty (Steve Gould would out-live him by over a year if I'm not mistaken.). There was a substantial New York Times obituary written. Sepokoski's son Daniel is now a historian of science and has either written or edited volumes (I think both) describing, from a history of science perspective, the importance of Sepkoski's work:
Paul Burnett said:
John Kwok said: ...since his untimely death by his colleague Michael Foote and others...
Paleontology is more competitive than I realized...
Paul was having some fun with you, John. :-)

John Kwok · 15 November 2010

I know that Mike, but thought I'd add the additional information for those who might have thought otherwise. IMHO Sepkoski was probably Gould's most brilliant doctoral student and the one who had the most successful career:
Mike Elzinga said:
John Kwok said: I believe Jack Sepkoski died from a heart attack at the age of fifty (Steve Gould would out-live him by over a year if I'm not mistaken.). There was a substantial New York Times obituary written. Sepokoski's son Daniel is now a historian of science and has either written or edited volumes (I think both) describing, from a history of science perspective, the importance of Sepkoski's work:
Paul Burnett said:
John Kwok said: ...since his untimely death by his colleague Michael Foote and others...
Paleontology is more competitive than I realized...
Paul was having some fun with you, John. :-)

FL · 15 November 2010

Hey, I'm pretty much done with this thread, except for Harold's question. I'm content that, despite the conscientious current work of the professional evolutionists, John Horgan's statement still stands.

There's certainly no published work that overturns Horgan (or Klaus Dose either, or Fazale Rana) with solid evidence, and there's none forthcoming in this thread).

So I don't need to keep playing with you boys on it. Didn't have to convince you, just had to present it to you. That's done.

Harold's question is all that's left (regarding OOL anyway--no time to play with anything else), and that question will go pretty quick, because we can just focus on one issue (already discussed): the origin of the genetic code.

Look at this carefully, Harold.

Hypothesis: The genetic code originated via intelligent design as specifically worded in 3-point form in William Dembski's specific 1999 IVP book Intelligent Design. It can be shown that the GC did not originate via chance or necessity, (see link below), therefore the only option left is ID.

This specific hypothesis can be falsified, scientifically, via empirical observation.

All you have to do, Harold, is publish specifically how the GC can arise from naturalistic evolutionary means ONLY, syntax and all (and please show that it DID happen that way, and HOW it happened that way.)

If you do so, then Dembski's specific ID hypothesis (as well as the Meyer Hartwig prediction found in Kenyon's book Pandas & People), is falsified regarding a major origin of life topic, and you get juicy Nobel Prize and TV commericials.

Ready, Harold? Then take it on. I'll talk again with you when you get it done. Ask John Kwok for help if you need it. (Heh!)

Link:

http://creationism.org.pl/groups/ptkrmember/inne/2004/Trevors,%20Abel,%20Chance%20and%20necessity%20do%20not%20explain%20the%20origin%20of%20life.pdf

FL

ben · 15 November 2010

FL thinks they give Nobel Prizes for debunking junk science. That's like giving someone an Academy Award for pointing out that Keanu Reeves can't act.

FL · 15 November 2010

Please be advised: you'll disagree with the given ID hypothesis, and its application to the GC, immediately. Not going to debate that. Also not going to debate that evolutionists like Eugene Koonin are already working on the issue from their angle. They are.

You simply asked a question Harold, and now you got an answer, a hypothesis that YOU can work on, if you so choose. The origin of the genetic code remains a wide open problem that people are putting forth proposals and hypotheses about, (and no everybody ain't on the same page or in agreement.) So I give you MY proposal, and that's the answer to your question, and you are welcome to do what you wish with it.

FL

FL · 15 November 2010

And be sure to read that link by Trevors and Abel. Their article is NOT my hypothesis, but it DOES show in great detail the difficult language-type stuff that's going into that genetic code. And you'll have to account for that stuff via undirected, naturalistic, chemical evolution. G'luck!

Paul Burnett · 15 November 2010

FL lied (as usual): It can be shown that the GC did not originate via chance or necessity, (see link below), therefore the only option left is ID.
This is a common creationist logical fallacy - so common that even FL should know better than to try using it. If by some twisted (and essentially always wrong) logic, evolution can somehow be shown to be wrong, then GodDidIt "therefore the only option left is ID." This is blatantly untrue and indefensible, as there are other equally plausible alternatives - aliens of various sorts, time travellers, invisible pink unicorns or the Flying Spaghetti Monster (peace be upon his noodly appendages), for example.

ben · 15 November 2010

Hypothesis X cannot explain phenomenon Y, therefore Jesus. It never gets old, does it?

Stanton · 15 November 2010

Of course, FL is too stupid and too dishonest realize that people already noticed that Dembski refuses to explain anything, including how's, when's, or even why's, in anything Dembski prattles about Intelligent Design.

Dembski refuses to state how or why Intelligent Design is supposed to be a science, let alone how or why Intelligent Design is supposed to be a magically better explanation than Evolutionary Biology.

And FL is apparently too stupid and too dishonest to remember that he's already tried his "three plank" schtick with us, and failed miserably to boot.

As such, FL demonstrates yet again that he is far more interested in lying, and is more interested about whining and bullying us into worshiping his lies. Like I said, FL would sooner kill and eat his own children than make an attempt to educate himself about science.

FL · 15 November 2010

This is blatantly untrue and indefensible, as there are other equally plausible alternatives - aliens of various sorts, time travellers, invisible pink unicorns or the Flying Spaghetti Monster (peace be upon his noodly appendages), for example.

Got no time for that stuff. The fact is that the genetic algorithm-writing, syntax and all, that is spelled out in Trevors and Abel, looks pretty much like Dembski's specified complexity, the same kind that's inherent in your posts and my posts. I don't know of any empirical marker for the detection of Spaghetti Monsters. But I know that specified complexity, like your posts and mine, are an empirical markers for the detection of intelligent design. FL

Stanton · 15 November 2010

This comment has been moved to The Bathroom Wall.

eric · 15 November 2010

FL said: All you have to do, Harold, is publish specifically how the GC can arise from naturalistic evolutionary means ONLY, syntax and all (and please show that it DID happen that way, and HOW it happened that way.) If you do so, then Dembski’s specific ID hypothesis (as well as the Meyer Hartwig prediction found in Kenyon’s book Pandas & People), is falsified
What's that? Do I hear the call of the common pseudoscientist? Why yes, I think I do: "Its your job to prove my idea wrong!" Not really. The way science actually works is that Dembski's hypothesis will remain untested and irrelevant until he, or one of his believers, proposes an experiment to test it, goes out and does so, and then reports some reproducible results in a peer reviewed journal. He doesn't get to claim the flagellum is irreproducibly complex and call it a day until someone proves him wrong. He has to show his work on how he came to that conclusion, in sufficient detail that other scientists could apply the same algorithm and reproduce his results. Given that neither he nor Behe have ever told anyone how they calculate the CSI in a pattern, even though they first claimed to have done the calculation 10+ years ago, I'm not holding my breath.
I'll talk again with you when you get it done.
If only that were true! Unfortunately I'm sure you'll be back far quicker than real scientists can discover the origin of the genetic code. The latter takes work; proselytizing blather does not. *** On a personal note, I do find it very comforting to see that you're still using the 'contrived dualism' argument creationists used in the 1982 McLean case. As the saying sort-of goes, those who do not learn from lost court cases are doomed to keep losing them.

Stanton · 15 November 2010

FL said:

This is blatantly untrue and indefensible, as there are other equally plausible alternatives - aliens of various sorts, time travellers, invisible pink unicorns or the Flying Spaghetti Monster (peace be upon his noodly appendages), for example.

Got no time for that stuff. The fact is that the genetic algorithm-writing, syntax and all, that is spelled out in Trevors and Abel, looks pretty much like Dembski's specified complexity, the same kind that's inherent in your posts and my posts. I don't know of any empirical marker for the detection of Spaghetti Monsters. But I know that specified complexity, like your posts and mine, are an empirical markers for the detection of intelligent design. FL
And yet, Dembski refused to demonstrate to anyone how to recognize "specified complexity" even when asked repeated. In other words, you're nothing but a coward and a liar who is too dishonest to admit that he's repeating another liar's lies.

FL · 15 November 2010

Forget about burden of proof on this one, Eric. I'm just givin' Harold what he asked for, that's all.

You don't have a scientific hypothesis unless you have a falsifiable hypothesis, that's why I provided empirical falsification.

Ichthyic · 15 November 2010

“Its your job to prove my idea wrong!”

Moreover, not only is this burden shifting, it's burden shifting without even recognizing that if they wanted to DO science, then it would be THEIR job to try and prove THEIR OWN idea wrong.

that's how science works.

it's why creationists like FL so clearly will never even begin to have a clue what they're on about.

they can't even be bothered to understand the first thing about how science works.

*sigh*

FL has actually proven what I suspected at the very first.

PT would be a really bad place to set up a general forum for discussion about a scientific conference.

good place to put a link up for someplace that actually IS structured and moderated though.

FL · 15 November 2010

Stanton: your posts are a clear example of specified complexity. You and I may not understand everything about SC, but SC does exist. Please see Dembski's book.

Ichthyic · 15 November 2010

but SC does exist.

only if you define cloud animals as SC.

of course, you won't understand what I mean by that.

Henry J · 15 November 2010

Well of course SC exists. It's bordered by NC and GA.

Gary Hurd · 15 November 2010

When the first ID creationists started polluting the thread, I was worried that this would discourage the NASA funded "pure science" folks from participating in what I hoped would be a straight discussion of their research. But, I have reconsidered.

Those of us who devote a considerable amount of our time, and resources to combating the anti-science scourge of creationism are too little appreciated by "purists." Maybe, just maybe, seeing the sort of bilge we are bailing out, our colleagues might appreciate the fact that they will be out of work if the creationists are allowed to win.

Mike Elzinga · 15 November 2010

Ichthyic said: *sigh* FL has actually proven what I suspected at the very first. PT would be a really bad place to set up a general forum for discussion about a scientific conference. good place to put a link up for someplace that actually IS structured and moderated though.
That does seem to be a problem with this forum; these trolls don’t get booted off to the Bathroom Wall in a consistent manner. But FL, Steve P., henry, Beyers and a few others, have had far more attention than they deserve. We have profiled them sufficiently enough that they can now be ignored; we know what they are, and we don’t have to keep recycling it. They’ve been reduced to mooning and throwing feces whenever the topics get interesting. The Bathroom Wall sewers are all backed up, so that is a good place to ship them.

Mike Elzinga · 15 November 2010

Gary Hurd said: When the first ID creationists started polluting the thread, I was worried that this would discourage the NASA funded "pure science" folks from participating in what I hoped would be a straight discussion of their research. But, I have reconsidered. Those of us who devote a considerable amount of our time, and resources to combating the anti-science scourge of creationism are too little appreciated by "purists." Maybe, just maybe, seeing the sort of bilge we are bailing out, our colleagues might appreciate the fact that they will be out of work if the creationists are allowed to win.
I would hope, after all these years, that more of our younger colleagues – especially those who are currently busy with research – can see more clearly, as a result of the exposure by earlier generations of scientists, just how bad this ID/creationist garbage is. Certainly this current crop of zombie camp followers of ID/creationism will continue to taunt and push the crap they themselves have never read or understood. Continuing to engage them after they have been thorough profiled and debunked doesn’t seem to be a good use of time. But we can still put up the profiles of their misconceptions, misrepresentations, and socio/political tactics without giving them our coattails.

NoNick · 15 November 2010

Well, no point in engaging FL any further, what a dishonest asshat.

If any other ID proponents would like to take a crack at harold's questions I'm still interested in the intellectually honest answers.

FL submits another non-answer that reminds me of another set of questions I have asked repeatedly and never seem to be able to get an answer to.

How much "specified complexity" is in the following ...

1) A 4" diameter orange

2) A 10" diameter sunflower

3) A fully mature female guinea pig

4) A 6' mature male human

Any species/variety/race may be chosen at the discretion of the person who cares to take up the challenge.

I realize that the ID proponents that visit here typically do not have the abilities to perform the necessary work (if it can actually be done at all) so I'm more than willing to accept the answers from Dembski or any other ID "scientist". I'd like to see the answers and the work performed to arrive at them posted here, but certainly if someone would like to post this to another forum I'd gladly visit elsewhere to view the responses.

As I value my life, I won't be holding my breath. ID apparently will forever be devoid of any real answers, merely assertions and false dichotomies like the garbage that FL provides.

I'm assuming that FL won't bother to respond at all given that he has once again dropped his pant-load and ducked out with a "gotta go !" having never really addressed the questions posed to him.

(Typical dishonesty FL, thank you for reinforcing the stereotype of the IDC proponent-sist.)

Mike Elzinga · 15 November 2010

The paper by David L. Abel has this abstract.

Abstract: To what degree could chaos and complexity have organized a Peptide or RNA World of crude yet necessarily integrated protometabolism? How far could such protolife evolve in the absence of a heritable linear digital symbol system that could mutate,instruct, regulate, optimize and maintain metabolic homeostasis? To address these questions, chaos, complexity, self-ordered states, and organization must all be carefully defined and distinguished. In addition their cause-and-effect relationships and mechanisms of action must be delineated. Are there any formal (non physical, abstract, conceptual, algorithmic) components to chaos, complexity, self-ordering and organization, or are they entirely physicodynamic (physical, mass/energy interaction alone)? Chaos and complexity can produce some fascinating self-ordered phenomena. But can spontaneous chaos and complexity steer events and processes toward pragmatic benefit, select function over non function, optimize algorithms, integrate circuits, produce computational halting, organize processes into formal systems, control and regulate existing systems toward greater efficiency? The question is pursued of whether there might be some yet-to-be discovered new law of biology that will elucidate the derivation of prescriptive information and control. “System” will be rigorously defined. Can a low informational rapid succession of Prigogine’s dissipative structures self-order into bona fide organization?

Just the abstract itself reveals those fundamental misconceptions by ID/creationists. It only gets worse in the body of the paper. This is what FL thinks is the challenge to abiogenesis. He has no clue and can't grasp the magnitude of the misconceptions and misinformation propagated in this paper.

Just Bob · 15 November 2010

A Modest Proposal:

Someone who has the time and the inclination could mine the archives of PT for the most egregious examples biological nonsense, inanities, lying, crackpottery, ignorance, racism, bigotry, homophobia, etc. from the accumulated posts of Messrs. Byers, FL, Steve P., Henry, et al.

Then put together a post on "This Is Your Brain on Creationism", or "The Best (Worst?) of PT Trolls" or suchlike.

SWT · 15 November 2010

Mike Elzinga said: The paper by David L. Abel has this abstract.

Abstract: To what degree could chaos and complexity have organized a Peptide or RNA World of crude yet necessarily integrated protometabolism? How far could such protolife evolve in the absence of a heritable linear digital symbol system that could mutate,instruct, regulate, optimize and maintain metabolic homeostasis? To address these questions, chaos, complexity, self-ordered states, and organization must all be carefully defined and distinguished. In addition their cause-and-effect relationships and mechanisms of action must be delineated. Are there any formal (non physical, abstract, conceptual, algorithmic) components to chaos, complexity, self-ordering and organization, or are they entirely physicodynamic (physical, mass/energy interaction alone)? Chaos and complexity can produce some fascinating self-ordered phenomena. But can spontaneous chaos and complexity steer events and processes toward pragmatic benefit, select function over non function, optimize algorithms, integrate circuits, produce computational halting, organize processes into formal systems, control and regulate existing systems toward greater efficiency? The question is pursued of whether there might be some yet-to-be discovered new law of biology that will elucidate the derivation of prescriptive information and control. “System” will be rigorously defined. Can a low informational rapid succession of Prigogine’s dissipative structures self-order into bona fide organization?

Just the abstract itself reveals those fundamental misconceptions by ID/creationists. It only gets worse in the body of the paper. This is what FL thinks is the challenge to abiogenesis. He has no clue and can't grasp the magnitude of the misconceptions and misinformation propagated in this paper.
Are there enough rhetorical questions in this abstract? Could it be that there is little actual content, and that the authors are trying to manufacture a point? Many readers will likely ignore this paper because the abstract is so vague that it promises little actual content. These are relevant concerns, and lead me to wonder why there is so little actual content in the abstract. Are the authors actually trying to provide an example of low-information text?

Stanton · 15 November 2010

FL said: Stanton: your posts are a clear example of specified complexity. You and I may not understand everything about SC, but SC does exist. Please see Dembski's book.
If Specified Complexity exists as Dembski explains it, then you would have already described it long, long ago. But, given as how you have refused to do so after being given opportunity after wasted opportunity suggests that it does not exist as Dembski claims. I'll make you a deal, FL: if you explain how to find Specified Complexity in nature, I'll stop referring to you as a cowardly liar who would sooner kill and eat his own children than make an effort to learn anything, or even debate in an honest manner. In fact, I'll stop if you even copy and paste where in his book Dembski allegedly describes specifically what Specified Complexity is, how to compute Specified Complexity, and how to find examples of Specified Complexity in nature. Oh, and be warned that if you try to worm your way out of this (as usual), I will remind you of this in the next thread you pollute with your lying inanity.

Stanton · 15 November 2010

Ichthyic said: but SC does exist. only if you define cloud animals as SC. of course, you won't understand what I mean by that.
Of course FL doesn't: he doesn't even understand what is meant by "science" or "debate"

Gary Hurd · 15 November 2010

Just Bob said: A Modest Proposal: Someone who has the time and the inclination could mine the archives of PT for the most egregious examples biological nonsense, inanities, lying, crackpottery, ignorance, racism, bigotry, homophobia, etc. from the accumulated posts of Messrs. Byers, FL, Steve P., Henry, et al. Then put together a post on "This Is Your Brain on Creationism", or "The Best (Worst?) of PT Trolls" or suchlike.
As it happens, I have a few hundred pages from many discussion sites. The working title is "You’ve Got to Be Kidding: The Pious Frauds of Creationism." The material is easy to come by, publishers are hard.

Just Bob · 15 November 2010

Publishing is free on PT. I was proposing a PT post, or maybe a series of 3 or so. Put a really eye-catching example of crackpottery on the front page, and ~1000 words of more examples on p.2.

They could be arranged by topic--or not, and have editorial comment--or not. I think most could stand on their own and be obviously wacko to any reader except the equally wacko.

Gary Hurd · 15 November 2010

Just Bob said: Publishing is free on PT. I was proposing a PT post, or maybe a series of 3 or so. Put a really eye-catching example of crackpottery on the front page, and ~1000 words of more examples on p.2. They could be arranged by topic--or not, and have editorial comment--or not. I think most could stand on their own and be obviously wacko to any reader except the equally wacko.
Then, I recommend: An Index to Creationist Claims.

John Kwok · 15 November 2010

Gee FL, if the ever kleptomaniac (and if you doubt me, ask Abbie Smith or XVIVO) Bill Dembski was such a genius, then how come he hasn't published this yet in Nature, Science, Cell, Proceedings of the Royal Society of London or any other credible mainstream scientific journal:
FL said: Hypothesis: The genetic code originated via intelligent design as specifically worded in 3-point form in William Dembski's specific 1999 IVP book Intelligent Design. It can be shown that the GC did not originate via chance or necessity, (see link below), therefore the only option left is ID. This specific hypothesis can be falsified, scientifically, via empirical observation. All you have to do, Harold, is publish specifically how the GC can arise from naturalistic evolutionary means ONLY, syntax and all (and please show that it DID happen that way, and HOW it happened that way.)
Oh sure, FL, anyone could write books. I could write one claiming that L. Ron Hubbard was the Intelligent Designer and that Katy Perry is his Joan of Arc. As for Bill, since he claims he writes books because they make lots and lots of money, how come he hasn't written per my request, the definitive textbook on Klingon Cosmology with Mikey Behe (Since Behe's American publisher also publishes the "Star Trek" books, along with Richard Dawkins's latest, greatest, book on the fact of biological evolution, entitled appropriately enough, "The Greatest Show on Earth".)?

John Kwok · 15 November 2010

I think Mr. Spock would say that would be most illogical use of your time:
Just Bob said: A Modest Proposal: Someone who has the time and the inclination could mine the archives of PT for the most egregious examples biological nonsense, inanities, lying, crackpottery, ignorance, racism, bigotry, homophobia, etc. from the accumulated posts of Messrs. Byers, FL, Steve P., Henry, et al. Then put together a post on "This Is Your Brain on Creationism", or "The Best (Worst?) of PT Trolls" or suchlike.

Mike Elzinga · 15 November 2010

SWT said: Are the authors actually trying to provide an example of low-information text?
I would say that this paper genuinely constitutes negative information (high on misinformation and misconceptions). Once it is imbibed, an unsuspecting rube can no longer learn real science; and the rube will be convinced that all those experiments and searches for the origins of life are bogus and will lead nowhere. It is in the same genre as the kind of innuendo coming from fundamentalist pulpits that demonizes science and the secular world. If you try to pin down anything specific, it is all smoke and mirrors. Yet the rhetorical tricks, associations, “questions,” assertions, misleading statements about atoms and molecules, “spontaneous molecular chaos,” and the “impossible chasms” alleged to be barriers to assembly leave no doubt about the feelings and ideas Abel wants his readers to have about complex molecular systems. And therefore, intelligent design. It’s a “world view” that has nothing to do with the realities of chemistry and physics.

SWT · 15 November 2010

I just took a look at the abstract for the Trevors and Abel paper. Two observations:

1) What the hell is this paper doing in Cell Biology International? The journal website indicates that it's principally for experimental results.

2) It's not a good sign when the first sentence of the abstract is question begging.

Dale Husband · 15 November 2010

FL said: I don't know of any empirical marker for the detection of Spaghetti Monsters. But I know that specified complexity, like your posts and mine, are an empirical markers for the detection of intelligent design. FL
Blatant falsehood. The only empirical way to prove intelligent design is to prove there is an intelligent designer. Specified complexity does not exist, except in delusional minds like yours and Dembski's. It's nothing but rhetoric.
FL said: Forget about burden of proof on this one, Eric. I'm just givin' Harold what he asked for, that's all. You don't have a scientific hypothesis unless you have a falsifiable hypothesis, that's why I provided empirical falsification.
Liar! The dogmas of the Genesis creation myths were empirically falsified centuries ago, but you still believe them.

Mike Elzinga · 15 November 2010

SWT said: I just took a look at the abstract for the Trevors and Abel paper. Two observations: 1) What the hell is this paper doing in Cell Biology International? The journal website indicates that it's principally for experimental results. 2) It's not a good sign when the first sentence of the abstract is question begging.
I’ve just noticed that both links to Abel and to Trevors and Abel don’t work. I was just accessing Abel’s paper before I posted my comment with the link. It makes me wonder if the authors are monitoring our comments and decided to take down the paper. Fortunately I have a copy.

SWT · 16 November 2010

Mike Elzinga said: I’ve just noticed that both links to Abel and to Trevors and Abel don’t work. I was just accessing Abel’s paper before I posted my comment with the link. It makes me wonder if the authors are monitoring our comments and decided to take down the paper. Fortunately I have a copy.
The link to the Abel paper that you posted still works fine for me. Here's a undamaged link to Trevors and Abel on the creationist site FL linked to: click here.

Robin · 16 November 2010

FL said: Hey, I'm pretty much done with this thread...
Don't flatter yourself, Floyd; you have been well-done in all your PT endeavors long before your first post.
I'm content that, despite the conscientious current work of the professional evolutionists, John Horgan's statement still stands.
Happily those professionals who work in the field and those of us who work in related fields recognize that Horgan's comment doesn't impact what we do know and doesn't impact the validity and credibility of the work that has been done, is done, and will be done in this field, as well as all other scientific fields. Indeed there is a great deal we still do not know about gravity, quantum mechanics, ecological population dynamics, and solar fusion, yet such is not seen as a weakness for those areas of research or for the valid information provided by the work that has been done so far. Bottom line: your argument amounts to nothing.

John Kwok · 16 November 2010

While I agree with you here, we shouldn't only insist on answering yours and harold's questions:
NoNick said: If any other ID proponents would like to take a crack at harold's questions I'm still interested in the intellectually honest answers.
On a more fundamental level, IDiots need to explain how Intelligent Design cretinism does a better job than modern evolutionary theory in explaining phenomena like mass extinctions, rapid taxonomic diversification, and both morphological and ecological stasis over time (which contemporary evolutionary theory does a rather imperfect job of doing, but just because it does, we shouldn't throw it out yet). Have yet to read anything from any IDiot, whether it is Behe, Dembski, FL or Steve P., which comes remotely close in addressing these important issues.

Stanton · 16 November 2010

Robin said: Bottom line: (FL's) argument amounts to nothing.
That's because FL's argument is nothing to begin with. All he can do is lie, lie, lie, then whine that "What I'm saying is true because Jesus and I say so, so there!"

John Kwok · 16 November 2010

Before you demand answers from harold and others, you need to address mine which I had asked of you, demanding that you explain how Intelligent Design can offer rigorous scientific explanations that are better than contemporary evolutionary theory in accounting for the origins, history and current composition of Planet Earth's biodiversity. If and when Intelligent Design can demosntrate such rigor, then, and only then, should anyone think of it as a credible alternative to contemporary evolutionary theory. However, Intelligent Design "scientists" like Behe, Dembski, Marks, Meyer, Minnich and Wells have had countless opportunities to try to demonstrate this via peer-reviewed scientific research and have demonstrated that they have very little inclination to do so. So, to put it bluntly FL, there is nothing in ID that demonstrates that it can be tested rigorously by scientific means. If ID can't be tested scientifically, then it follows that it isn't science (And even you have admitted this by your risible effort in trying to link ID to theology as well as science.).

SWT · 16 November 2010

Stanton said:
Robin said: Bottom line: (FL's) argument amounts to nothing.
That's because FL's argument is nothing to begin with. All he can do is lie, lie, lie, then whine that "What I'm saying is true because Jesus and I say so, so there!"
This is incorrect. All he can claim is that "What I'm saying is true because it's what I think Jesus meant, so there!"

Mike Elzinga · 16 November 2010

SWT said:
Mike Elzinga said: I’ve just noticed that both links to Abel and to Trevors and Abel don’t work. I was just accessing Abel’s paper before I posted my comment with the link. It makes me wonder if the authors are monitoring our comments and decided to take down the paper. Fortunately I have a copy.
The link to the Abel paper that you posted still works fine for me. Here's a undamaged link to Trevors and Abel on the creationist site FL linked to: click here.
Well, that link I gave is working again today. The site must have been down for a while last night. Thanks for the working link to the Trevors and Abel paper. That abstract and paper are just as bad. I added it to my pseudo-science file along with the others by Abel, Dembski & Marks, and others. I'll put the abstract to Trevors & Abel here for others also. If one has the time to waste, sometimes it is a "good" exercise to go through this kind of junk to learn the patterns of thought. After which, one needs to disinfect the brain with some better science fiction.

Where and how did the complex genetic instruction set programmed into DNA come into existence? The genetic set may have arisen elsewhere and was transported to the Earth. If not, it arose on the Earth, and became the genetic code in a previous lifeless, physicalechemical world. Even if RNA or DNA were inserted into a lifeless world, they would not contain any genetic instructions unless each nucleotide selection in the sequence was programmed for function. Even then, a predetermined communication system would have had to be in place for any message to be understood at the destination. Transcription and translation would not necessarily have been needed in an RNA world. Ribozymes could have accomplished some of the simpler functions of current protein enzymes. Templating of single RNA strands followed by retemplating back to a sense strand could have occurred. But this process does not explain the derivation of ‘‘sense’’ in any strand. ‘‘Sense’’ means algorithmic function achieved through sequences of certain decision-node switch-settings. These particular primary structures determine secondary and tertiary structures. Each sequence determines minimum-free-energy folding propensities, binding site specificity, and function. Minimal metabolism would be needed for cells to be capable of growth and division. All known metabolism is cybernetic e that is, it is programmatically and algorithmically organized and controlled.

eric · 16 November 2010

Mike Elzinga said: I'll put the abstract to Trevors & Abel here for others also.

...Ribozymes could have accomplished some of the simpler functions of current protein enzymes. Templating of single RNA strands followed by retemplating back to a sense strand could have occurred. But this process does not explain the derivation of ‘‘sense’’ in any strand. ‘‘Sense’’ means algorithmic function achieved through sequences of certain decision-node switch-settings...

So, to defend the notion that the property 'CSI' cannot occur naturally, they say it relies on a 'sense' property that (they say) can't occur naturally. I wonder what new property will be needed to defend 'sense.' Truly turtles all the way down.

Mike Elzinga · 16 November 2010

eric said: So, to defend the notion that the property 'CSI' cannot occur naturally, they say it relies on a 'sense' property that (they say) can't occur naturally. I wonder what new property will be needed to defend 'sense.' Truly turtles all the way down.
I don’t see how they can get to “sense” starting with nonsense.

henry · 16 November 2010

John Kwok said: You're utterly hopeless and delusional, henry. Even if you were right, there is the unfortunate fact that, independently of Darwin, Wallace developed the theory of evolution via natural selection:
henry said: You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Thanks for demonstrating once more the acutely dire state of your intellectually-challenged mind. You are certainly enjoying your membership in the Dishonesty Institute IDiot Borg Collective. May you Live Long and Prosper as a DI IDiot Borg drone.
Too bad the Klingons couldn't help the Yankees repeat this year. It's hard to find good help nowadays. I haven't read anything from the Discovery Institute. I'm an ICR guy. Sometimes, I might read Answers in Genesis articles. It was the AIG website that I found out that Washington Irving was the American responsible for the flat earth hoax.

henry · 16 November 2010

Cubist said:
henry said:
Stanton said:
Cubist said: And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...
henry is one of those Christians who believes that breaking any Commandment, or committing any sort of sin is permissible, so long as it's done with the intent of scoring brownie points from Jesus: henry is a shameless liar, and he arrogantly looks down at all of us because we don't assume that the literal reading of the Book of Genesis is a literal and accurate description of reality. Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.
You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Hello, henry! Have you had a chance to read GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499) yet? And would you care to, like, substantiate your accusation that Muller was guilty of assuming his conclusion, by working thru Muller’s reasoning and demonstrating that Muller did, indeed, assume his conclusion? Or do you expect everyone to just, you know, take your bald, unsupported word for it?
It must result, in consequence, that a dropping out of, or even a slight change in any one of these parts is very likely to disturb fatally the whole machinery; for this reason we should expect very many, if not most, mutations to result in lethal factors, and of the rest, the majority should be "semi-lethal" or at least disadvantageous in the struggle for life, and likely to set wrong any delicately balanced system, such as the reproductive system. This statement immediately follows your quote of Muller. It seems to contradict what Muller had just stated. Last year, somebody suggested I look up some E. coli research. It involved 20,000 generations of E. coli. I pointed out that it's still E. coli. I was told I didn't have enough imagination. Is that what is needed for Muller's fly experiments, imagination? The flies are still flies.

John Kwok · 16 November 2010

I had the pleasure of watching Henry Morris of ICR get smacked down by Ken Miller in Ken's very first debate against a delusional creationist (BTW I helped organize and run that debate.). As for the Yankees, they'll be back next year:
henry said:
John Kwok said: You're utterly hopeless and delusional, henry. Even if you were right, there is the unfortunate fact that, independently of Darwin, Wallace developed the theory of evolution via natural selection:
henry said: You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Thanks for demonstrating once more the acutely dire state of your intellectually-challenged mind. You are certainly enjoying your membership in the Dishonesty Institute IDiot Borg Collective. May you Live Long and Prosper as a DI IDiot Borg drone.
Too bad the Klingons couldn't help the Yankees repeat this year. It's hard to find good help nowadays. I haven't read anything from the Discovery Institute. I'm an ICR guy. Sometimes, I might read Answers in Genesis articles. It was the AIG website that I found out that Washington Irving was the American responsible for the flat earth hoax.

SWT · 16 November 2010

henry said: (quoting Muller) It must result, in consequence, that a dropping out of, or even a slight change in any one of these parts is very likely to disturb fatally the whole machinery; for this reason we should expect very many, if not most, mutations to result in lethal factors, and of the rest, the majority should be "semi-lethal" or at least disadvantageous in the struggle for life, and likely to set wrong any delicately balanced system, such as the reproductive system.
I suggest you compare the text you just quoted ... what Muller predicted based on the evolutionary mechanisms known to him at the time ... with the the definition ID people use for "irreducibly complex" systems that ID people claim cannot evolve.

eric · 16 November 2010

henry said: I'm an ICR guy. Sometimes, I might read Answers in Genesis articles.
How broad-minded of you. I guess reading two secondary sources with the same biases is like reading a primary source? Reminds me of the Blues Brothers. "Say, what type of music to you play here?" "Why both types, mister. Country AND western."

harold · 16 November 2010

FL -

You most certainly did not answer my question.

Who designed what, when, and how?

All parts required for a meaningful answer.

Flint · 16 November 2010

All parts required for a meaningful answer.

Wrong word! ANY old woo is "meaningful" to FL. What you mean is, all parts require answers that are testable in principle.

harold · 16 November 2010

Flint -

Yes, that's a good point.

Henry -

Why don't you help FL out? After all, I'm sure you want to keep everybody in the big tent...at least for now...

All I'm looking for is a testable, or even testable in principle, answer, to these questions -

Who is the designer, what did that designer do, how, and when?

Stanton · 16 November 2010

harold said: Flint - Yes, that's a good point. Henry - Why don't you help FL out? After all, I'm sure you want to keep everybody in the big tent...at least for now... All I'm looking for is a testable, or even testable in principle, answer, to these questions - Who is the designer, what did that designer do, how, and when?
According to Creationists like henry and FL, the Designer is Jesus, who used magic 10,000 years ago. And what they say is true and more scientific than actual science because Jesus is Lord, and if we don't believe what they say, they're going to get Jesus to send us to Hell and suffer for ever and ever and ever and ever.

Mike Elzinga · 16 November 2010

Stanton said: According to Creationists like henry and FL, the Designer is Jesus, who used magic 10,000 years ago. And what they say is true and more scientific than actual science because Jesus is Lord, and if we don't believe what they say, they're going to get Jesus to send us to Hell and suffer for ever and ever and ever and ever.
They have to practice what they learned in their apologetics course. No time to learn all that secular science stuff.

eddie · 16 November 2010

harold said: Why don't you help FL out? After all, I'm sure you want to keep everybody in the big tent...at least for now... All I'm looking for is a testable, or even testable in principle, answer, to these questions - Who is the designer, what did that designer do, how, and when?
Trivial, since you do not demand a solution within a given timeframe. Wait a few decades and (unless there are some serious advances in medical science) you will be dead. Then one of three things will happen: 1. There is an afterlife. You will meet with God and know for certain the answer to your questions. 2. There is no afterlife. You will cease to be after death and the question is probably resolved in the negative, viz there is no designer. (It is possible that God created the world 6,000 years ago, continues to exist Himself, but doesn't have any plans for us after death. But this seems unlikely.) 3. There is an afterlife, but you have no more information to resolve the questions than now. (Spirits contacted by mediums don't seem particularly knowlegable, and often have to resort to guessing the initial letter of their loved one's names.) (1) is convential Christian (as well as other religions) thought, so if there is a God, seems the most likely. (2) is the atheist's best guess (although a few spiritual paths can agree), but is an unsatisfactory resolution to the experiment. For example, there is no gloating possible about how the Christians got it wrong. (3) is the one I'd like to be true, since the concept of an aftelife where the immortal soul is reduced to doing party tricks in the dark is very appealing. I appreciate you might want an experiment that resolves the answer for you in this life, but look at it this way: billions of people already know the solution to your questions, so long as they are already dead. It's those who don't know the answer who are in the minority.

FL · 17 November 2010

Harold, you've already been given a specific, falsifiable scientific hypothesis there, relating to ID and to a specific OOL topic. You have a specific real-world means of falsifying it.

Let's see how you do with that much.

FL

Oclarki · 17 November 2010

FL said: Harold, you've already been given a specific, falsifiable scientific hypothesis there, relating to ID and to a specific OOL topic. You have a specific real-world means of falsifying it. Let's see how you do with that much. FL
Alas, all that we really have is an unsupported default claim by IDCs. Evolution did not happen therefore goddidit. We currently cannot provide an answer to the question of how life began, therefore goddidit. A slight problem, though...in science the accurate and meaningful default is "we do not (yet) have an answer for that question", not "goddidit". So in the context of a scientific approach to establishing natural explanations for the natural phenomena that we observe, IDC really needs to come up with explanations or those phenomena that are a bit more robust and a bit more compelling than "goddidit". Positive, testable explanations, not mere pseudo "challenges" to other natural explanations for the observed phenomena. So have at it. What positive testable natural explanations for natural phenomena can you provide that would compel us to conclude that your specific interpretation of "god" is/was responsible for everything that we can observe in the natural world?

Cubist · 17 November 2010

henry said:
Cubist said:
henry said:
Stanton said:
Cubist said: And one more thing: If you're a Christian, henry, you might want to avoid bearing false witness against Muller (in this case, by accusing Muller of an error he never actually committed). I am given to understand that there's a whole Commandment which forbids the bearing of false witness; I am further given to understand that the Biblically-validated post mortem fate of false witnesses involves a lake of fire, and it sure doesn't sound like it would be comfortable for even a second, let alone for all eternity...
henry is one of those Christians who believes that breaking any Commandment, or committing any sort of sin is permissible, so long as it's done with the intent of scoring brownie points from Jesus: henry is a shameless liar, and he arrogantly looks down at all of us because we don't assume that the literal reading of the Book of Genesis is a literal and accurate description of reality. Hell, he's also a racist bigot, to boot, what with his fretting over how liberals, immigrants and non-whites are threatening to destroy America.
You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Hello, henry! Have you had a chance to read GENETIC VARIABILITY, TWIN HYBRIDS AND CONSTANT HYBRIDS, IN A CASE OF BALANCED LETHAL FACTORS (GENETICS 1918 3: 422–499) yet? And would you care to, like, substantiate your accusation that Muller was guilty of assuming his conclusion, by working thru Muller’s reasoning and demonstrating that Muller did, indeed, assume his conclusion? Or do you expect everyone to just, you know, take your bald, unsupported word for it?
It must result, in consequence, that a dropping out of, or even a slight change in any one of these parts is very likely to disturb fatally the whole machinery; for this reason we should expect very many, if not most, mutations to result in lethal factors, and of the rest, the majority should be "semi-lethal" or at least disadvantageous in the struggle for life, and likely to set wrong any delicately balanced system, such as the reproductive system. This statement immediately follows your quote of Muller. It seems to contradict what Muller had just stated.
Just a second there, Hoss. Your original assertion was that Muller was assuming his conclusion, and that is the assertion I asked you to support. If you want to also claim, as a second, unrelated assertion, that Muller contradicted himself, go for it -- but you still need to provide support for your original assertion.
You know -- your assertion that Muller was assuming his conclusion.
That assertion.
The assertion which, as best I can tell, makes you a false witness, and therefore puts you in danger of the lake of fire God has waiting for false witnesses. Do you have any intention of ever supporting your assertion that Muller assumed his conclusion, henry? Or are you okay with being a false witness, and having other Christians regard you as a follower of the Father of Lies, rather than a follower of Christ?


Dale Husband · 17 November 2010

FL said: Harold, you've already been given a specific, falsifiable scientific hypothesis there, relating to ID and to a specific OOL topic. You have a specific real-world means of falsifying it. Let's see how you do with that much. FL
It must be invisible, because I never saw this "specific, falsifiable scientific hypothesis" of yours, nor did I see a "specific real-world means of falsifying it." Unless, of course, you are lying once more about things you have no comprehension of.

henry · 17 November 2010

By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that? http://www.americanvision.org/mediafiles/americas-200-year-old-war-with-islam.pdf
John Kwok said: I had the pleasure of watching Henry Morris of ICR get smacked down by Ken Miller in Ken's very first debate against a delusional creationist (BTW I helped organize and run that debate.). As for the Yankees, they'll be back next year:
henry said:
John Kwok said: You're utterly hopeless and delusional, henry. Even if you were right, there is the unfortunate fact that, independently of Darwin, Wallace developed the theory of evolution via natural selection:
henry said: You would make Thomas the bull dog Huxley proud, but I don't have any scientific evidence for that claim nor do I have any scientific evidence that Darwin wrote Origin of Species.
Thanks for demonstrating once more the acutely dire state of your intellectually-challenged mind. You are certainly enjoying your membership in the Dishonesty Institute IDiot Borg Collective. May you Live Long and Prosper as a DI IDiot Borg drone.
Too bad the Klingons couldn't help the Yankees repeat this year. It's hard to find good help nowadays. I haven't read anything from the Discovery Institute. I'm an ICR guy. Sometimes, I might read Answers in Genesis articles. It was the AIG website that I found out that Washington Irving was the American responsible for the flat earth hoax.

Paul Burnett · 17 November 2010

henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that? http://www.americanvision.org/mediafiles/americas-200-year-old-war-with-islam.pdf
American Vision is a nonprofit Christian ministry. Its mission statement calls for "equipping and empowering Christians to restore America’s biblical foundation." The president of American Vision, Gary DeMar, is a graduate of Western Michigan University (1973) and Reformed Theological Seminary (1979) and earned his PHD in 2007 from Whitfield Theological Seminary. ... The group...is active in the creation science movement. - http://en.wikipedia.org/wiki/American_Vision Henry, are you really sure about the level of, er, historical scholarship backing your statement above?

Stanton · 17 November 2010

Paul Burnett said:
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that? http://www.americanvision.org/mediafiles/americas-200-year-old-war-with-islam.pdf
American Vision is a nonprofit Christian ministry. Its mission statement calls for "equipping and empowering Christians to restore America’s biblical foundation." The president of American Vision, Gary DeMar, is a graduate of Western Michigan University (1973) and Reformed Theological Seminary (1979) and earned his PHD in 2007 from Whitfield Theological Seminary. ... The group...is active in the creation science movement. - http://en.wikipedia.org/wiki/American_Vision Henry, are you really sure about the level of, er, historical scholarship backing your statement above?
Do remember that henry is a malicious idiot of a racist bigot. His "level of scholarship" includes claiming that one has to believe, under pain of eternal damnation, that the entirety of the English translation of the Book of Genesis is word for word 150% true, with the stark exception of "windows of the sky," which are somehow, magically a metaphor. And then there's also the fact that he thinks that he can magically dismiss all of Evolutionary Biology by saying "E. coli is still E. coli... Flies are still flies," or that he's stupid enough to think that there is no scientific evidence for Charles having written "On the Origin of Species"

John Kwok · 17 November 2010

According to my trusted sources on Qo'nos, it the Intelligent Designers were really the Klingons:
Stanton said: According to Creationists like henry and FL, the Designer is Jesus, who used magic 10,000 years ago. And what they say is true and more scientific than actual science because Jesus is Lord, and if we don't believe what they say, they're going to get Jesus to send us to Hell and suffer for ever and ever and ever and ever.

John Kwok · 17 November 2010

In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?

Stanton · 17 November 2010

John Kwok said: According to my trusted sources on Qo'nos, it the Intelligent Designers were really the Klingons:
Saying blasphemy like that in public is liable to get you banished to Stroganov for a 1000 years, to suffer the endless torment of meatballs in meat sauce.

John Kwok · 17 November 2010

Paul, thanks for chiming in. You should note my reply to the ever delusional henry. Even Dawkins mentions the correct phrase in his book "The God Delusion".

John Kwok · 17 November 2010

I think it's a safer bet that Dembski will spend the rest of eternity in Gre'thor (the Klingon Hell):
Stanton said:
John Kwok said: According to my trusted sources on Qo'nos, it the Intelligent Designers were really the Klingons:
Saying blasphemy like that in public is liable to get you banished to Stroganov for a 1000 years, to suffer the endless torment of meatballs in meat sauce.

John Kwok · 17 November 2010

I suppose henry probably thinks my family fled from some Chinese rice paddies in southern China (Not so, and, in fact, the maternal side of my family has been here in the USA since the mid 1920s; my paternal side is from the North.).

But more to the point I strongly suspect that he doesn't realize that what prompted Darwin to write "Origin" was the unexpected surprise that Wallace had stumbled upon, independently of Darwin, Natural Selection, which is why that theory is correctly termed the Darwin-Wallace Theory of Evolution via Natural Selection.

eric · 17 November 2010

Dale Husband said:
FL said: Harold, you've already been given a specific, falsifiable scientific hypothesis there, relating to ID and to a specific OOL topic. You have a specific real-world means of falsifying it. Let's see how you do with that much. FL
It must be invisible, because I never saw this "specific, falsifiable scientific hypothesis" of yours, nor did I see a "specific real-world means of falsifying it." Unless, of course, you are lying once more about things you have no comprehension of.
Well, its not like FL comes up with anything original. He doesn't even bother explaining anything in detail, he just points to other people's work. So it is very safe to assume he's referring to the 'classic ID' argument, which consists of three wrong steps followed by a wrong conclusion: 1) assume a contrived dualism. Evolution is usually split into several parts to hide the contrivance. ERRORS: ignores the possibility of unknown explanations. Ignores the null hypothesis. In fact, this step replaces the null hypothesis with design so that design is automatically, methodologically favored when data is lacking. This is a departure from the scientific method, so after step 1 it would be a misnomer to claim IDers do 'bad' science - in fact they aren't doing any form of science at all. Note the systemic errors inherent in this step have been pointed out to IDers since at least 1982, and they refuse to address them. 2) Estimate the probability of all components of some system coming together at the same time via known mechanisms. ERRORS: again ignores the possibility of unknown mechanisms. Behe also used a simple model system which didn't include some known mechanisms, and no IDer has corrected him or revised his calculations. The assumption that biological systems come together in one fell swoop is known and observed to be wrong. Finally, step 2 assumes a theoretical probability calculation is some form of empirical data. It is not. It is, at best, a tool for helping scientists decide what future experiments may be fruitful. IDers, of course, never proceed to doing any experiments. 3) Say that this probability is lower than some 'limit' that non-design causes can't exceed. ERRORS: limit typically pulled out of ass. Whole logic of this step shown to be utter failure every time a random number generartor creates an event less probable than the hypothetical limit (FYI: for any limit, this can be accomplished by taking the log of the limit, multiplying by 1.6, and rolling that number of six-sided dice. Or setting up an Excel sheet to do same, which takes 2-3 minutes.) Conclusion: call this 'evidence of design.' ERRORS: you haven't proven anything except that, given some vague and unproven set of probabilistic assumptions, and ignoring known mechanisms, you estimate that it is improbable that biological systems assemble all at once - which no one claims happens anyway.

John Kwok · 17 November 2010

This is the absurd probabilistic and statistical rationale behind Dembski's "Explanatory Filter" and the absurdity is substantially compounded by the fact that someone supposedly trained in statistics and mathematics (which Dembski lists proudly on his CV as a M. S. degree in statistics from the University of Illinois, Chicago and a Ph. D. degree in mathematics from the University of Chicago) ought to know better than replacing the null hypothesis with "design":
eric said: 1) assume a contrived dualism. Evolution is usually split into several parts to hide the contrivance. ERRORS: ignores the possibility of unknown explanations. Ignores the null hypothesis. In fact, this step replaces the null hypothesis with design so that design is automatically, methodologically favored when data is lacking. This is a departure from the scientific method, so after step 1 it would be a misnomer to claim IDers do 'bad' science - in fact they aren't doing any form of science at all. Note the systemic errors inherent in this step have been pointed out to IDers since at least 1982, and they refuse to address them.

harold · 17 November 2010

FL -
Harold, you’ve already been given a specific, falsifiable scientific hypothesis there, relating to ID and to a specific OOL topic. You have a specific real-world means of falsifying it. Let’s see how you do with that much.
No, I have not. What you gave me is this.
Hypothesis: The genetic code originated via intelligent design as specifically worded in 3-point form in William Dembski’s specific 1999 IVP book Intelligent Design.
Okay, this part is a start. So it's the modern genetic code that was designed? Let's make that testable - who designed it, when, and how? (Obviously, this view, although I think it's wrong, is not in dispute with the theory of evolution. If this is what the designer did, then you must believe that life has been evolving since this happened - and that other aspects of living cells arose naturally as well.)
It can be shown that the GC did not originate via chance or necessity, (see link below), therefore the only option left is ID.
This part is just worthless. It doesn't address any of my questions. Who designed the genetic code, when, and how?
This specific hypothesis can be falsified, scientifically, via empirical observation.
No, not in the form you've presented it, it can't. Now who is the designer (provide independently verifiable objective evidence), how did the designer design the genetic code (provide independently verifiable objective evidence), and when did the designer design the genetic code (provide independently verifiable objective evidence).

John Kwok · 17 November 2010

FL also needs to answer the same question I posed to both Behe and Dembski, namely, how is Intelligent Design a better, more comprehensive, theory than contemporary evolutionary theory in accounting for the origin, history and current complexity of Planet Earth's biodiversity? Haven't read or heard anything from the Dishonesty Institute's mendacious intellectual pornographers or their acolytes - including FL - which addresses this.

Rolf Aalberg · 17 November 2010

FL, we have a lot of work to be done before us yet whereas all you've got to do is convince us that magic works. I take the opportunity to quote again one of my favorites from Robert B. Laughlin's "A Different Universe":

The idea that the struggle to understand the natural world has come to an end is not only wrong, it is ludicrously wrong. We are surrounded by mysterious physical miracles, and the continuing, unfinished task of science is to unravel them.

Stanton · 17 November 2010

John Kwok said: FL also needs to answer the same question I posed to both Behe and Dembski, namely, how is Intelligent Design a better, more comprehensive, theory than contemporary evolutionary theory in accounting for the origin, history and current complexity of Planet Earth's biodiversity? Haven't read or heard anything from the Dishonesty Institute's mendacious intellectual pornographers or their acolytes - including FL - which addresses this.
I've never read or heard anything from the Dishonesty Institute that so much as explains how Intelligent Design is supposed to be a science, or even how it's supposed to work beyond an Intelligent Design proponent pointing and whining "I don't understand how [insert biological system here], therefore, Jesus magic, and Evolution doesn't work!" If FL really wants us to take him seriously (besides the fact that he wants us to worship him as our Savior), it would help if he were to actually tell us what Intelligent Design is, what about it that makes it a science, and can be applied to other sciences, and, most importantly, what about Intelligent Design makes it a better explanation than Evolutionary Biology. But, since FL is too terrified to tell us, and that the sources he cowardly and dishonestly whines at us to read also refuse to tell us, well...

John Kwok · 17 November 2010

Intelligent Design proponents have had nearly thirty years to offer truly rigorous, scientificaly testable hypotheses that deal with the very question I posed to Dembski and Behe. So far the closest they've come to that has been Meyer's truly risible "hypotheses" that he offers in his "Signature" book, but none can be verified according to the well-established rules of science:
Stanton said:
John Kwok said: FL also needs to answer the same question I posed to both Behe and Dembski, namely, how is Intelligent Design a better, more comprehensive, theory than contemporary evolutionary theory in accounting for the origin, history and current complexity of Planet Earth's biodiversity? Haven't read or heard anything from the Dishonesty Institute's mendacious intellectual pornographers or their acolytes - including FL - which addresses this.
I've never read or heard anything from the Dishonesty Institute that so much as explains how Intelligent Design is supposed to be a science, or even how it's supposed to work beyond an Intelligent Design proponent pointing and whining "I don't understand how [insert biological system here], therefore, Jesus magic, and Evolution doesn't work!" If FL really wants us to take him seriously (besides the fact that he wants us to worship him as our Savior), it would help if he were to actually tell us what Intelligent Design is, what about it that makes it a science, and can be applied to other sciences, and, most importantly, what about Intelligent Design makes it a better explanation than Evolutionary Biology. But, since FL is too terrified to tell us, and that the sources he cowardly and dishonestly whines at us to read also refuse to tell us, well...

henry · 17 November 2010

John Kwok said: In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?
Only the original Treaty had the phrase in question. The revised Treaties dropped that phrase. Somehow, Dawkins overlooked that fact or just ignored it.

henry · 17 November 2010

I can't possibly be a racist. This is the age of Obama--post racial, post partisan, and post achievement America.
Stanton said:
Paul Burnett said:
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that? http://www.americanvision.org/mediafiles/americas-200-year-old-war-with-islam.pdf
American Vision is a nonprofit Christian ministry. Its mission statement calls for "equipping and empowering Christians to restore America’s biblical foundation." The president of American Vision, Gary DeMar, is a graduate of Western Michigan University (1973) and Reformed Theological Seminary (1979) and earned his PHD in 2007 from Whitfield Theological Seminary. ... The group...is active in the creation science movement. - http://en.wikipedia.org/wiki/American_Vision Henry, are you really sure about the level of, er, historical scholarship backing your statement above?
Do remember that henry is a malicious idiot of a racist bigot. His "level of scholarship" includes claiming that one has to believe, under pain of eternal damnation, that the entirety of the English translation of the Book of Genesis is word for word 150% true, with the stark exception of "windows of the sky," which are somehow, magically a metaphor. And then there's also the fact that he thinks that he can magically dismiss all of Evolutionary Biology by saying "E. coli is still E. coli... Flies are still flies," or that he's stupid enough to think that there is no scientific evidence for Charles having written "On the Origin of Species"

henry · 17 November 2010

Sorry, John, Either you quoted Dawkin incorrectly or he quoted from the treaty incorrectly. http://en.wikipedia.org/wiki/Treaty_of_Tripoli
John Kwok said: In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?

Stanton · 17 November 2010

henry the racist liar said: I can't possibly be a racist. This is the age of Obama--post racial, post partisan, and post achievement America.
So were you lying when you were whining about how immigrants, colored people and liberals are ruining America and Europe for white Christian Americans or are you conveniently forgetting about that? By the way, how come you can't be bothered to provide any source or statement that demonstrates Intelligent Design is scientific, or how come you can't be bothered to provide any source that demonstrates that Evolution has been disproven because you claim that "E. coli is still E. coli" or that "flies are still flies"?

NoNick · 17 November 2010

henry said: Sorry, John, Either you quoted Dawkin incorrectly or he quoted from the treaty incorrectly. http://en.wikipedia.org/wiki/Treaty_of_Tripoli
By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?
Of course henry's lack of intellectual honesty, or at the very least, reading comprehension prevents him from parsing the following last lines of the Wiki article ...
However the Arabic and English texts differ, the Barlow translation (Article 11 included) was the text presented to, read aloud in, and ratified unanimously by the U.S. Senate.
Regardless if what you say is true, how does this speak to the "Founders" intent henry ? Any thoughts ?

John Kwok · 17 November 2010

Oh my dear delusional henry, Richard Dawkins isn't the only one to have cited that comment from the Treaty of Tripoli (And NoNick, thinks for the reminder.). It's been published recently in several other books too, though I don't have the citations handy. Speaking of citations, though, you would be far more credible if you cited either Bernard Bailyn's work or that of Gordon Wood, who is widely regarded as the foremost American historian on the American Revolution, the drafting of the United States Constitution and the early history of the American Republic until the early 1820s (I admit too to a personal bias with regards to Professor Wood, having studied American history from him in college.):
henry said:
John Kwok said: In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?
Only the original Treaty had the phrase in question. The revised Treaties dropped that phrase. Somehow, Dawkins overlooked that fact or just ignored it.
Maybe you ought to do a better job in reading work by noteworthy historians like Bailyn and Wood, not by quote-mining more inane rubbish from a Xian website.

Science Avenger · 17 November 2010

henry said: I can't possibly be a racist. This is the age of Obama--post racial, post partisan, and post achievement America.
That deserves a place in the Stupid Hall of Fame, especially given that such comments are so frequent among the racist, partisan, nonachieving Teabagger types. Irony is lost on the keep-your-government-off-my-medicare crowd.

John Kwok · 17 November 2010

Poor henry is probably laboring under the misconception that my ancestors were coolies. Am sure he thinks my family is among those responsible for the damage he has claimed in the past:
Stanton said: So were you lying when you were whining about how immigrants, colored people and liberals are ruining America and Europe for white Christian Americans or are you conveniently forgetting about that? By the way, how come you can't be bothered to provide any source or statement that demonstrates Intelligent Design is scientific, or how come you can't be bothered to provide any source that demonstrates that Evolution has been disproven because you claim that "E. coli is still E. coli" or that "flies are still flies"?
If henry can't get his American history straight, what makes you think he is capable of demonstrating that Intelligent Design cretinism is scientific?

John Kwok · 17 November 2010

Don't blame all the Tea Party followers, just the lunatics please. But in henry's case, am sure he's a good buddy of Sarah Palin, that notable Alaskan invertebrate paleontologist:
Science Avenger said:
henry said: I can't possibly be a racist. This is the age of Obama--post racial, post partisan, and post achievement America.
That deserves a place in the Stupid Hall of Fame, especially given that such comments are so frequent among the racist, partisan, nonachieving Teabagger types. Irony is lost on the keep-your-government-off-my-medicare crowd.

Mike Elzinga · 17 November 2010

Rolf Aalberg said: FL, we have a lot of work to be done before us yet whereas all you've got to do is convince us that magic works. I take the opportunity to quote again one of my favorites from Robert B. Laughlin's "A Different Universe":

The idea that the struggle to understand the natural world has come to an end is not only wrong, it is ludicrously wrong. We are surrounded by mysterious physical miracles, and the continuing, unfinished task of science is to unravel them.

Clearly FL is in no position to convince anyone of anything important. He already knows he has been reduced to mooning and throwing feces; a rather undignified state for a top-dog preacher wannabe. There is a thread of something like 100 pages over on AtBC on which he made a complete fool of himself and showed he knows nothing about religion (his self-proclaimed field of “expertise”). Then he got nailed again when he claimed to understand the relationships between science and religion by having read Dembski. When asked to demonstrate his understanding of Dembski’s “science,” FL ran away. He continues to run away from every "scientific" paper by his heroes. So now we have the strongest possible evidence here on PT that he knows nothing about religion or about science. Therefore all his taunts and feigning of expertise – which he does out of habit – just make him look stupid. And he still doesn’t get it. But then he is probably playing to an audience of youngster rubes in his church. As long as he can fool them, apparently nothing else matters to him. That’s one of the hallmarks of really bad religion.

NoNick · 17 November 2010

This will be my last "feeding of the troll" so to speak but I thought someone here might be aware of a blog post/article I came across some time ago but have been unable to find again. It was a gentleman who had gone to the Library of Congress and looked up the original articles/records for himself. IIRC, aside from the recorded discussions concerning the treaty, the Barlow translation has been printed in full in the newspapers of the time. He researched these newspapers from that point forward in time and could find no articles of outcry or dissent. This seemed to point once again that even the populace had some concept of the what the "Founders" had intended in their actions of both religious freedom and church state separation. Is anyone familiar with this blog article ?

My apologies, and I will not drag this thread any further off-topic.

Mike Elzinga · 17 November 2010

John Kwok said: But in henry's case, am sure he's a good buddy of Sarah Palin, that notable Alaskan invertebrate paleontologist:
Isn’t that palintologist? ;-)

Science Avenger · 17 November 2010

John Kwok said: Don't blame all the Tea Party followers, just the lunatics please.
Sure, right after I see a Teabagger event that doesn't celebrate lunacy and lunatics.

John Kwok · 17 November 2010

Think I heard she claimed to have collected invertebrate fossils with her father, a science teacher, and that Barney Rubble came along with Dino and Bam-Bam for company:
Mike Elzinga said:
John Kwok said: But in henry's case, am sure he's a good buddy of Sarah Palin, that notable Alaskan invertebrate paleontologist:
Isn’t that palintologist? ;-)

John Kwok · 17 November 2010

That's when she was Pebbles's age if I'm not mistaken:
John Kwok said: Think I heard she claimed to have collected invertebrate fossils with her father, a science teacher, and that Barney Rubble came along with Dino and Bam-Bam for company:
Mike Elzinga said:
John Kwok said: But in henry's case, am sure he's a good buddy of Sarah Palin, that notable Alaskan invertebrate paleontologist:
Isn’t that palintologist? ;-)

John Kwok · 17 November 2010

No, I haven't seen it. It wasn't until the Great Revival of the 1820s and 1830s - spearheaded by Methodists and other, more Evangelical, Protestant Christian groups - that Americans found "GOD". Might surprise my conservative and Republican "brothers" (and "sisters") to learn that the United States at the time of the American Revolution and the drafting the United States Constitution was far more secularist in orientation than they would care to admit:
NoNick said: This will be my last "feeding of the troll" so to speak but I thought someone here might be aware of a blog post/article I came across some time ago but have been unable to find again. It was a gentleman who had gone to the Library of Congress and looked up the original articles/records for himself. IIRC, aside from the recorded discussions concerning the treaty, the Barlow translation has been printed in full in the newspapers of the time. He researched these newspapers from that point forward in time and could find no articles of outcry or dissent. This seemed to point once again that even the populace had some concept of the what the "Founders" had intended in their actions of both religious freedom and church state separation. Is anyone familiar with this blog article ? My apologies, and I will not drag this thread any further off-topic.

John Kwok · 17 November 2010

By "Great Revival", I actually meant "Great Awakening" if I am not mistaken:
John Kwok said: No, I haven't seen it. It wasn't until the Great Revival of the 1820s and 1830s - spearheaded by Methodists and other, more Evangelical, Protestant Christian groups - that Americans found "GOD". Might surprise my conservative and Republican "brothers" (and "sisters") to learn that the United States at the time of the American Revolution and the drafting the United States Constitution was far more secularist in orientation than they would care to admit:
NoNick said: This will be my last "feeding of the troll" so to speak but I thought someone here might be aware of a blog post/article I came across some time ago but have been unable to find again. It was a gentleman who had gone to the Library of Congress and looked up the original articles/records for himself. IIRC, aside from the recorded discussions concerning the treaty, the Barlow translation has been printed in full in the newspapers of the time. He researched these newspapers from that point forward in time and could find no articles of outcry or dissent. This seemed to point once again that even the populace had some concept of the what the "Founders" had intended in their actions of both religious freedom and church state separation. Is anyone familiar with this blog article ? My apologies, and I will not drag this thread any further off-topic.

Just Bob · 17 November 2010

One more time for racist Henry (well, no, he won't get it, so it's for anybody else):

Imagine that 2 years ago we had elected a president with the SAME family history as Barack Obama: born in Hawaii to an American mother and a foreign father, a couple of years in childhood spent going to school in another country, family deserted by the father, raised mainly by his grandparents. Assume the same political philosophy and professional career, including election to President vs. John McCain.

Assume all that stuff is the same. Now assume that the absent father was SWEDISH, and the President is blond and blue-eyed and his name is Sven Olsen. Then ask yourself--would there even BE a "Tea Party" or "birthers"? If the candidate and President's middle name were Joseph (like STALIN, right?), would it have been repeated ad nauseum by right-wing radio and TV hosts? When we've had moderate-to-liberal presidents in the past, why was there no "Tea Party" then?

My mother's favorite (valid) generalization: Republicans may not be racists, but racists are Republicans [and now "Tea Partiers"].

harold · 17 November 2010

Loren Williams -

Okay, I know you're long gone, but I wanted to say that I did check out that tree of life with extinct species included, and I found it to be incredibly interesting, insightful, sobering, and profound.

For my fellow end-of-the-threaders who are still here, here is the link Loren originally provided, in case you didn't see it. http://web2.uconn.edu/gogarten/

Gary Hurd -

I rest my case. There is one you have to do it twice to. If I mention his handle he will reappear, but I think you know what I'm talking about.

henry · 18 November 2010

This is under the background section, last paragraph. "The first treaty is cited as historical evidence in the modern day controversy over whether there was religious intent by the founders of the United States government. Article 11 of the first treaty has been interpreted as an official denial of a Christian basis for the U.S. government." This implies that subsequent, revised treaties omitted Article 11, which is what I've stated. Only the original treaty had phrase "the Government of the United States of America is not, in any sense, founded on the Christian religion"
NoNick said:
henry said: Sorry, John, Either you quoted Dawkin incorrectly or he quoted from the treaty incorrectly. http://en.wikipedia.org/wiki/Treaty_of_Tripoli
By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?
Of course henry's lack of intellectual honesty, or at the very least, reading comprehension prevents him from parsing the following last lines of the Wiki article ...
However the Arabic and English texts differ, the Barlow translation (Article 11 included) was the text presented to, read aloud in, and ratified unanimously by the U.S. Senate.
Regardless if what you say is true, how does this speak to the "Founders" intent henry ? Any thoughts ?

NoNick · 18 November 2010

*head~desk*

Stanton · 18 November 2010

NoNick said: *head~desk*
In other words, NoNick, you have accurately pointed out that henry totally completely lacks both intellectual honesty AND reading comprehension skills. No doubt henry thinks that the Founding Fathers were actually a bunch of religious fanatics who wanted to found a theocratic dictatorship where people would be punished with death for not using a literal interpretation of the Bible.

John Kwok · 18 November 2010

It's fascinating harold, but they're just catching up now to what Gould, Raup, Sepkoski, Foote and others have done with data from the fossil record for years now:
harold said: Loren Williams - Okay, I know you're long gone, but I wanted to say that I did check out that tree of life with extinct species included, and I found it to be incredibly interesting, insightful, sobering, and profound. For my fellow end-of-the-threaders who are still here, here is the link Loren originally provided, in case you didn't see it. http://web2.uconn.edu/gogarten/ Gary Hurd - I rest my case. There is one you have to do it twice to. If I mention his handle he will reappear, but I think you know what I'm talking about.

John Kwok · 18 November 2010

So when are you going to read any of Gordon Wood's excellent histories, which demonstrate that the United States wasn't founded on Christian principles, but instead, was a result of the French - and especially Scottish - Enlightenments? It was Wood who demonstrated just how radical in nature the American Revolution was.

Your ignorance of American history, especially around the time of the drafting of the United States Constitution and its immediate aftermath, is woeful to say the least. Both NoNick and Stanton have made virtually the same observation.

henry · 18 November 2010

What's with the race card?
John Kwok said: I suppose henry probably thinks my family fled from some Chinese rice paddies in southern China (Not so, and, in fact, the maternal side of my family has been here in the USA since the mid 1920s; my paternal side is from the North.). But more to the point I strongly suspect that he doesn't realize that what prompted Darwin to write "Origin" was the unexpected surprise that Wallace had stumbled upon, independently of Darwin, Natural Selection, which is why that theory is correctly termed the Darwin-Wallace Theory of Evolution via Natural Selection.

henry · 18 November 2010

http://richarddawkins.net/articles/4098 Art. 11. As the Government of the United States of America is not, in any sense, founded on the Christian religion; as it has in itself no character of enmity against the laws, religion, or tranquillity, of Mussulmen; and, as the said States never entered into any war, or act of hostility against any Mahometan nation, it is declared by the parties, that no pretext arising from religious opinions, shall ever produce an interruption of the harmony existing between the two countries. Of course, the website doesn't mention that only the original treaty has Article 11, but the revised treaties omit it.
John Kwok said: In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?

Science Avenger · 18 November 2010

henry said: Last year, somebody suggested I look up some E. coli research. It involved 20,000 generations of E. coli. I pointed out that it's still E. coli. I was told I didn't have enough imagination. Is that what is needed for Muller's fly experiments, imagination? The flies are still flies.
Once again I think it's worth pointing out that this is nothing more than a semantic game. Henry's response amounts to "there is no evolution because I can still use the same name for those creatures that I used for their ancestors". One might as well say that humans and chimpanzees did not evolve from a common ancestor because I can still call them all "apes". It's the genetic content of the creatures that matters Henry, not what words you choose to call them.

phantomreader42 · 18 November 2010

So, for the record, you admit that the original version of the Treaty, ratified unanimously by Congress, clearly and unambiguously stated that "the Government of the United States of America is not, in any sense, founded on the Christian religion". Therefore, you admit, irrevocably, that this country was NOT founded on your religion. Case closed. The USA was NOT founded as a "christian nation", whatever that means, if it means anything at all, and we have clear documentation to prove it. By claiming that the treaty was later changed, are you trying to argue that the United States was not founded as a christian nation, but was later changed into one? If so, what was the relevant Constitutional amendment, and when was it ratified? Because my copy of the Constitution contains no such amendment. As always, henry is a lying sack of shit, just like all creationists. He's also a traitor, just like every theocrat.
henry said: http://richarddawkins.net/articles/4098 Art. 11. As the Government of the United States of America is not, in any sense, founded on the Christian religion; as it has in itself no character of enmity against the laws, religion, or tranquillity, of Mussulmen; and, as the said States never entered into any war, or act of hostility against any Mahometan nation, it is declared by the parties, that no pretext arising from religious opinions, shall ever produce an interruption of the harmony existing between the two countries. Of course, the website doesn't mention that only the original treaty has Article 11, but the revised treaties omit it.
John Kwok said: In several books, of which maybe the most noteworthy is Richard Dawkins's "The God Delusion", the relevant portion of the Treaty of Tripoli is cited, in which is noted that the United States was not - nor was it ever founded - as a "Christian nation". But thanks for demonstrating anew that your understanding of American history is as abysmal as your grasp of what is valid mainstream science with respect to biology (at least):
henry said: By the way, since your comment about the Treaty of Tripoli, I found out that subsequent revisions omitted the phrase "the government of the United States of America is not in any sense founded on the Christian religion". Were you aware of that?

phantomreader42 · 18 November 2010

Science Avenger said:
henry said: Last year, somebody suggested I look up some E. coli research. It involved 20,000 generations of E. coli. I pointed out that it's still E. coli. I was told I didn't have enough imagination. Is that what is needed for Muller's fly experiments, imagination? The flies are still flies.
Once again I think it's worth pointing out that this is nothing more than a semantic game. Henry's response amounts to "there is no evolution because I can still use the same name for those creatures that I used for their ancestors". One might as well say that humans and chimpanzees did not evolve from a common ancestor because I can still call them all "apes". It's the genetic content of the creatures that matters Henry, not what words you choose to call them.
But to henry, only the word matters. Reality is irrelevant. Words are not chosen to describe things with any consideration of accuracy, not for creationists. They think the words are magic. The question or definitions doesn't even enter into their hollow heads.

SWT · 18 November 2010

phantomreader42 said: But to henry, only the word matters. Reality is irrelevant. Words are not chosen to describe things with any consideration of accuracy, not for creationists. They think the words are magic. The question or definitions doesn't even enter into their hollow heads.
One might say his mind is hermeneutically sealed ...

Stanton · 18 November 2010

Because you talk exactly like a racist, on top of talking like a pompous idiot who thinks he knows more about science than actual science.
henry said: What's with the race card?
John Kwok said: I suppose henry probably thinks my family fled from some Chinese rice paddies in southern China (Not so, and, in fact, the maternal side of my family has been here in the USA since the mid 1920s; my paternal side is from the North.). But more to the point I strongly suspect that he doesn't realize that what prompted Darwin to write "Origin" was the unexpected surprise that Wallace had stumbled upon, independently of Darwin, Natural Selection, which is why that theory is correctly termed the Darwin-Wallace Theory of Evolution via Natural Selection.

John Kwok · 18 November 2010

I was going to ask you the same question, dumb ass:
henry said: What's with the race card?
John Kwok said: I suppose henry probably thinks my family fled from some Chinese rice paddies in southern China (Not so, and, in fact, the maternal side of my family has been here in the USA since the mid 1920s; my paternal side is from the North.). But more to the point I strongly suspect that he doesn't realize that what prompted Darwin to write "Origin" was the unexpected surprise that Wallace had stumbled upon, independently of Darwin, Natural Selection, which is why that theory is correctly termed the Darwin-Wallace Theory of Evolution via Natural Selection.
Have you opted to start reading any of Gordon Wood's books? Or even Ken Miller's "Only A Theory: Evolution and the Battle for America's Soul", in which Ken lauds his former colleague for some rather useful historical insight on the history of evolution denialism here in the good ol' USA.

eric · 18 November 2010

henry said: Of course, the website doesn't mention that only the original treaty has Article 11, but the revised treaties omit it.
It always comes down to lying with you guys, doesn't it? I didn't have to spend more than about 45 seconds googling to figure out where the fundies had misrepresented the truth this time. 1. The arabic-language treaty initially signed by the executive branch may or may not have had a section 11 as written. 2. Some version of this treaty went to Congress. It appears it didn't have the famous "not a Christian nation..." bit in it. 3. Congress added the famous phrase in open (i.e. verbally debated) session. They voted on the revised treaty in open session, and after a unanimous agreement on the version with the new phrase in it, they ratified it. 4. So, the fundies are essentially claiming that a bit of diplomacy that didn't become law matters more than the actual treaty that did. Its Santorum amendment/NCLB all over again. 4. The aftermath is unclear to me, but there might have been some additional fiddling with it by the executive branch after it was ratified. But AFAIK, no additional version of it was ratified. 5. The irony in all of this is that the henry's claim made me look stuff up, and what I found was actually a stronger separation argument than the common one. You see, it turns out that it wasn't the executive branch that put in the "not a Christian nation" bit. It wasn't a result of any diplomatic pressure. Nor did it become law because some individual congressman snuck in a document change at the last minute. All of Congress did it, together. The people's elected representatives went out of their way to make an extra, diplomatically unnecessary statement to the world that we are not a Christian nation.

harold · 18 November 2010

In my personal experience to date, only racists use the term "race card".

Despite being strongly progressive and despising unjustified discrimination and unkindness, I am not especially "PC". But if I do accidentally offend (which does not happen very often to begin with), I don't start blabbering about some kind of "card", I apologize.

Robin · 18 November 2010

eric said: The people's elected representatives went out of their way to make an extra, diplomatically unnecessary statement to the world that we are not a Christian nation.
You should have bolded this part Eric. Maybe even all-capped AND underlined as well. I'm not sure that would have been enough to get the point into Henry's thick skull, but at least the issued nail-in-his-argument's-coffin would have had the proper emphasis.

henry · 18 November 2010

Just Bob said: One more time for racist Henry (well, no, he won't get it, so it's for anybody else): Imagine that 2 years ago we had elected a president with the SAME family history as Barack Obama: born in Hawaii to an American mother and a foreign father, a couple of years in childhood spent going to school in another country, family deserted by the father, raised mainly by his grandparents. Assume the same political philosophy and professional career, including election to President vs. John McCain. Assume all that stuff is the same. Now assume that the absent father was SWEDISH, and the President is blond and blue-eyed and his name is Sven Olsen. Then ask yourself--would there even BE a "Tea Party" or "birthers"? If the candidate and President's middle name were Joseph (like STALIN, right?), would it have been repeated ad nauseum by right-wing radio and TV hosts? When we've had moderate-to-liberal presidents in the past, why was there no "Tea Party" then? My mother's favorite (valid) generalization: Republicans may not be racists, but racists are Republicans [and now "Tea Partiers"].
Our current president isn't moderate-to-liberal. http://www.amazon.com/Radical-Chief-Barack-American-Socialism/dp/1439155089 Your mother was wrong about Republicans--the southern Democrats were the racists. http://en.wikipedia.org/wiki/African-American_Civil_Rights_Movement_%281955%E2%80%931968%29 During this period, the white-dominated Democratic Party regained political control over the South. The Republican Party—the "party of Lincoln"—which had been the party that most blacks belonged to, shrank to insignificance as black voter registration was suppressed. By the early 20th century, almost all elected officials in the South were Democrats.

JimNorth · 18 November 2010

The Yale Avalon Project (http://avalon.law.yale.edu/subject_menus/barmenu.asp) contains text for a number of treaties the United States signed with several Muslim countries. I especially like this Article repeated in almost every treaty; it leaves out any mention of Christian or Muslim religions specifically, but stays close to the intent of the first amendment of the U.S. constitution.

As the Government of the United States of America has in itself no character of enmity against the laws, religion, or tranquility of any nation, and as the said States have never entered into any voluntary war, or act of hostility, except in defence of their just rights on the high seas, it is declared by the Contracting parties that no pretext arising from religious opinions shall ever produce an interruption of Harmony between the two nations; and the Consuls and agents of both nations, shall have liberty to Celebrate the rights of their respective religions in their own houses.

David Fickett-Wilbar · 18 November 2010

henry said: Sorry, John, Either you quoted Dawkin incorrectly or he quoted from the treaty incorrectly. http://en.wikipedia.org/wiki/Treaty_of_Tripoli
Did you read the article? The question is whether the sentence appears in the Arabic version. As the article you yourself linked says, "However the Arabic and English texts differ, the Barlow translation (Article 11 included) was the text presented to, read aloud in, and ratified unanimously by the U.S. Senate."

phantomreader42 · 18 November 2010

David Fickett-Wilbar said:
henry said: Sorry, John, Either you quoted Dawkin incorrectly or he quoted from the treaty incorrectly. http://en.wikipedia.org/wiki/Treaty_of_Tripoli
Did you read the article? The question is whether the sentence appears in the Arabic version. As the article you yourself linked says, "However the Arabic and English texts differ, the Barlow translation (Article 11 included) was the text presented to, read aloud in, and ratified unanimously by the U.S. Senate."
He's just desperately trying to hide from the fact that he's admitted that Congress ratified a treaty that clearly said that his cult does not get to rule the country with an iron fist, and that this fact will not change no matter how much he prays to his imaginary, impotent god.

Matt Young · 18 November 2010

OK, people, let's stop whipping a dead horse. Mr. henry has clearly lost, though he is not perceptive enough to realize it, and there is no need to pile on. May I suggest that we either return to something roughly approximating the topic of this thread, or else stop and do something else?

Just Bob · 18 November 2010

"the southern Democrats were the racists."

Notice your tense, Henry? WERE

After the passage of the Civil Rights Act (by DEMOCRATS), the Dixiecrats (segregationists) abandoned the Democratic party wholesale and became Republicans (strongly encouraged by Nixon's "southern strategy").

If you can't face the facts of US history, too damn bad.

Where do you find the most racism today? The Deep South

Where is creationism most entrenched? The Deep South.

Which states have the worst poverty and lowest educational scores? The Deep South.

Which are the most solidly Republican states? The Deep South.

Reckon there's any connection?

Gary Hurd · 18 November 2010

Wheew. Matt, the discussion is over. Why not close the thread?

Mike Elzinga · 18 November 2010

Gary Hurd said: Wheew. Matt, the discussion is over. Why not close the thread?
I'll second that.

Matt Young · 18 November 2010

OK.